G53746


Basic Information

Item Value
gene id G53746
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 19956713 ~ 19958285 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67220
aaaaattactgaTTCTAAtccattttcttctgttcttatgTCATCTGactctctcccctcctcactTCCGCATCCACAGCTTACTGAAATGTATCAGGGCATCAGCTGCATGGACTCGGTATGCTGCTTCTCTGATGGGGAGACGGCCTGCGCTGCGGTGGGGAGAGTGGTGGATCGAGTGATGGGCCGCTGCGACCCTTCATGTGTCAGCAGGTGTGGCATCTCTCTCAATAGTCTCTGCTGCCGGAGAATCTCCTACAAGCTGGAGCACGACGAAGCAGCAGTGGTAGATGTGTAACACCCAGTGCCCTGCTCCCTGCCCCACTGCCTCAGGCCACACTGCtaactttttagattttttttagaCTTTTTATCCAGGATAAGAAACTGGGGAGGGACAATACAGAGAagcaacaataacagtaaatgaaaTGGCTCAACACCAAGGCTGTAAGGAATGTGTATGTTTAGGGGATGGGATTTTGCTGGCACtagttttacagaaaataaatcagaaatggtACACTTTTttcccaaaatgtattttaagtttttcattttcagatacatatgtttcttgtgtttataaaatccggatttctgtgtttgtgcgtgtgtgcgtgcgtgcatgtgtgcgAGGCATTTCTTTCTGAAAGCTAGCCTCACTAACTCTGAGGATGCTCTGCTTTATTGAGGTGGCAgggctgtttctgtgttttcttcatGTGGCTGAcctgatttttatatattgatgaCTGCAAATGGTTGTTTCCACAACTggtttaaacttttatttaaatatatattattattctgtacCCAAGATCCAGTGTTAATTGATTTTCTGTGAATCTTTTTCTTCCCCATGTGTtactttattaaacaaaacaaaatattaacaacATCTGGACTGTTTACAGTGGGTCCAGAGAGAAGGCGTTTAGCCAGTTTTGGGTATGCAAACCTTTTGTACATCTCGGCTTGCTTGTTCTTCTTGATTAGGATTTCTGGTTTGCTATAACCATGTTGCATTTCCAAGGCAGGAGGGAGTGAAGGGCATGCCTCTGACtctttcctaaaaaaaaaaaaaaaaaaatctgccttgTGCATCCTAGTCCACCATTTCAGGTCTCATTTTGTAGTCAAGTATGTATACAGTCATAAATAAAAACGGAAGCGGTTGGACACTCTCTACTGCAGCTGGgtttgtctttgtgtctttgtaTCTGGCAGGCTGGGATAGGCCCCAGCTCAGCAGCTCTAAACACTGAAGCCAGGGTGCGAATCCAGCAATGTAGAAGAATGGGGCTTGGCCCTGAGACACTGAACGCACACTTGGCCCTTCATTTTCACAcggcaatattattttttgttctcaaTTCAAGGCAAATCTCTTCTCAATTTCTTTAGTTTTAGCTGGGTTGCCTTACCTCTGGCTCTCTGTCACACTCTCCCTGCTGCTGAGGAAGCtttatattgattttcttttgtttgttctgaacaatacaatttacagtttttatacatggatattttataattgatttttaaatcgTCTATATTTTAAGCTGAA

Function

GO:

id name namespace
GO:0009103 lipopolysaccharide biosynthetic process biological_process
GO:0008653 lipopolysaccharide metabolic process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67220 True 1573 lncRNA 0.42 1 19956713 19958285

Neighbor

gene id symbol gene type direction distance location
AMCG00009024 NA coding downstream 216714 19739288 ~ 19739999 (-)
AMCG00009023 NA coding downstream 228183 19722941 ~ 19728530 (-)
AMCG00009021 sox2,LOC106584342,LOC107655276 coding downstream 695602 19260287 ~ 19261111 (-)
AMCG00009020 NA coding downstream 1483012 18472634 ~ 18473701 (-)
AMCG00009017 NA coding downstream 1546591 18404514 ~ 18410122 (-)
AMCG00009028 dcun1d1,LOC107656862,LOC107722250,LOC107568628 coding upstream 13230 19971515 ~ 20010245 (-)
AMCG00009030 NA coding upstream 150661 20108946 ~ 20110200 (-)
AMCG00009031 NA coding upstream 189812 20148097 ~ 20150492 (-)
AMCG00009037 NA coding upstream 783006 20741291 ~ 20741486 (-)
AMCG00009036 NA coding upstream 783208 20741493 ~ 20742332 (-)
G53722 NA non-coding downstream 19271 19859819 ~ 19937442 (-)
G53668 NA non-coding downstream 334511 19621812 ~ 19622202 (-)
G53662 NA non-coding downstream 386653 19569823 ~ 19570060 (-)
G53632 NA non-coding downstream 604901 19351464 ~ 19351812 (-)
G53629 NA non-coding downstream 608685 19347785 ~ 19348028 (-)
G53748 NA non-coding upstream 1288 19959573 ~ 19960354 (-)
G53751 NA non-coding upstream 34748 19993033 ~ 19993252 (-)
G53752 NA non-coding upstream 47604 20005889 ~ 20006091 (-)
G53776 NA non-coding upstream 110626 20068911 ~ 20070175 (-)
G53790 NA non-coding upstream 141462 20099747 ~ 20100015 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 2088017 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 2209670 17724719 ~ 17747043 (-)
AMCG00008989 prr12b,prr12,LOC107708947,LOC104948901,LOC108441158,LOC108273897,LOC107729421,LOC107658420 other downstream 3043414 16823795 ~ 16913299 (-)
G53017 NA other downstream 3342252 16613224 ~ 16614461 (-)
G52951 NA other downstream 3551587 16404710 ~ 16405126 (-)
AMCG00009029 NA other upstream 2742 19961027 ~ 19970276 (-)
AMCG00009027 NA other upstream 103239 20061524 ~ 20062179 (-)
G53809 NA other upstream 221514 20179799 ~ 20271814 (-)
G54003 LOC107575789 other upstream 2224803 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 3866944 23825229 ~ 23863035 (-)

Expression


Co-expression Network