G53793 (LOC107745311)


Basic Information

Item Value
gene id G53793
gene name LOC107745311
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 20136632 ~ 20212802 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67272
gagcaggttttcatcaaggatgtctctgtacattgctgcattcatctttccctcgatcccgactagtctcccagttcctgccgctgaaaaacatccccacagcatgatgctgccaccaccatgcttcactgtagggatggtattggccaggtgatgagcggtgcctggtttcctccagacatgacgcttgccattcaggccaaagagttcaatctttgttccATCAGACcacagaattttgtttctcatggtccgagagtccttcaggtgccttttggcaaactccagatgggctgtcatgtgccttttactgaggagtggcttccgtctggccactctaccatacaggcctg

Function

NR:

description
PREDICTED: 26S proteasome non-ATPase regulatory subunit 9-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67272 True 353 lncRNA 0.51 2 20136632 20212802

Neighbor

gene id symbol gene type direction distance location
AMCG00009025 atp11b coding upstream 187197 19939076 ~ 19949435 (+)
AMCG00009026 LOC107550661,LOC107566880 coding upstream 220726 19861278 ~ 19915906 (+)
AMCG00009016 rfc4,LOC103355474 coding upstream 1762364 18361526 ~ 18374268 (+)
AMCG00009014 NA coding upstream 1916379 18219072 ~ 18220253 (+)
AMCG00009006 ect2,LOC107593151 coding upstream 2095671 18036794 ~ 18040961 (+)
AMCG00009032 NA coding downstream 50273 20263075 ~ 20263866 (+)
AMCG00009034 nlgn1 coding downstream 243655 20456457 ~ 20461014 (+)
AMCG00009035 nlgn1,LOC106584306 coding downstream 473343 20686145 ~ 20692387 (+)
AMCG00009038 NA coding downstream 785096 20997898 ~ 21087025 (+)
AMCG00009042 NA coding downstream 2217538 22430340 ~ 22441467 (+)
G53791 NA non-coding upstream 32632 20103780 ~ 20104000 (+)
G53764 NA non-coding upstream 106201 20030156 ~ 20030431 (+)
G53762 NA non-coding upstream 106628 20029294 ~ 20030004 (+)
G53711 LOC107656862,LOC107568628,LOC107722250,LOC107708830,LOC107578399,LOC107681826 non-coding upstream 150749 19983869 ~ 19985883 (+)
G53706 NA non-coding upstream 176277 19959573 ~ 19960355 (+)
G53803 NA non-coding downstream 50694 20263496 ~ 20271814 (+)
G53812 NA non-coding downstream 77976 20290778 ~ 20317034 (+)
G53834 NA non-coding downstream 236927 20449729 ~ 20544953 (+)
G53855 NA non-coding downstream 418646 20631448 ~ 20724272 (+)
G53877 NA non-coding downstream 521553 20734355 ~ 20734623 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 589125 19527897 ~ 19547507 (+)
G53520 NA other upstream 1582672 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 2216040 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 2405972 17729366 ~ 17730660 (+)
AMCG00008995 NA other upstream 2792956 17330892 ~ 17343676 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other downstream 163993 20376795 ~ 20396356 (+)
G53911 NA other downstream 955429 21168231 ~ 21168575 (+)
G53915 NA other downstream 1061809 21274611 ~ 21275354 (+)
G53917 NA other downstream 1079439 21292241 ~ 21293901 (+)
G54263 NA other downstream 3670515 23883317 ~ 23975906 (+)

Expression


Co-expression Network