G53878


Basic Information

Item Value
gene id G53878
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 20759669 ~ 20759870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67368
CTCAGTATGAAAATAATAGGTTTTTGACATCTTTGAAGTAGACGGCCCTTCAtgcttatgaaaaaaaaaaaaaaaaaaaaaaaaaattcaacatTGCTAGCAGTTAATTGTTTGGACACTATTTCCAAATCAAAAACATAGAActttgcagaaataaataatgtgtaattaacatttgaGGCTGGATGACACAGGATTTCAC

Function

GO:

id name namespace
GO:0051234 establishment of localization biological_process
GO:0006810 transport biological_process

KEGG:

id description
ko04975 Fat digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU67368 True 202 lncRNA 0.29 1 20759669 20759870

Neighbor

gene id symbol gene type direction distance location
AMCG00009035 nlgn1,LOC106584306 coding upstream 67282 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 298655 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 495803 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 810234 19939076 ~ 19949435 (+)
AMCG00009026 LOC107550661,LOC107566880 coding upstream 843763 19861278 ~ 19915906 (+)
AMCG00009038 NA coding downstream 238028 20997898 ~ 21087025 (+)
AMCG00009042 NA coding downstream 1670470 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 1853482 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 1872847 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 1910014 22669884 ~ 22686612 (+)
G53877 NA non-coding upstream 25046 20734355 ~ 20734623 (+)
G53855 NA non-coding upstream 35397 20631448 ~ 20724272 (+)
G53834 NA non-coding upstream 214716 20449729 ~ 20544953 (+)
G53812 NA non-coding upstream 442635 20290778 ~ 20317034 (+)
G53803 NA non-coding upstream 487855 20263496 ~ 20271814 (+)
G53882 NA non-coding downstream 145183 20905053 ~ 20905348 (+)
G53884 NA non-coding downstream 150024 20909894 ~ 20910148 (+)
G53886 NA non-coding downstream 214107 20973977 ~ 20974187 (+)
G53895 NA non-coding downstream 277620 21037490 ~ 21037761 (+)
G53900 NA non-coding downstream 305288 21065158 ~ 21065997 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 363313 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 1212162 19527897 ~ 19547507 (+)
G53520 NA other upstream 2205709 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 2839077 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 3029009 17729366 ~ 17730660 (+)
G53911 NA other downstream 408361 21168231 ~ 21168575 (+)
G53915 NA other downstream 514741 21274611 ~ 21275354 (+)
G53917 NA other downstream 532371 21292241 ~ 21293901 (+)
G54263 NA other downstream 3123447 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 4052748 24812618 ~ 24816534 (+)

Expression


Co-expression Network