G53884


Basic Information

Item Value
gene id G53884
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 20909894 ~ 20910148 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67374
ACGACACCATCCCTCACTCGGGAAGAGCAAAACTCACACACCCATTGACACAAATCTTATTCTATCCCCTTGGTTCTGGAGGCTCCATGTGACTGAGGACAAATGGATTTAGTATCAAAGGCAATAAACCTCATGACTCAAGGAAAACCGAAGGATGCATTGGAAAGATACTATCACAAAGGTCACTCTGCTCCATGAGACGCCTTCAGGACATTCTGTACATTCACATTTAGGGGCACACACTTATCGCTCTCC

Function

NR:

description
PREDICTED: hepatic triacylglycerol lipase-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67374 True 255 lncRNA 0.45 1 20909894 20910148

Neighbor

gene id symbol gene type direction distance location
AMCG00009035 nlgn1,LOC106584306 coding upstream 217507 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 448880 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 646028 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 960459 19939076 ~ 19949435 (+)
AMCG00009026 LOC107550661,LOC107566880 coding upstream 993988 19861278 ~ 19915906 (+)
AMCG00009038 NA coding downstream 87750 20997898 ~ 21087025 (+)
AMCG00009042 NA coding downstream 1520192 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 1703204 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 1722569 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 1759736 22669884 ~ 22686612 (+)
G53882 NA non-coding upstream 4546 20905053 ~ 20905348 (+)
G53878 NA non-coding upstream 150024 20759669 ~ 20759870 (+)
G53877 NA non-coding upstream 175271 20734355 ~ 20734623 (+)
G53855 NA non-coding upstream 185622 20631448 ~ 20724272 (+)
G53834 NA non-coding upstream 364941 20449729 ~ 20544953 (+)
G53886 NA non-coding downstream 63829 20973977 ~ 20974187 (+)
G53895 NA non-coding downstream 127342 21037490 ~ 21037761 (+)
G53900 NA non-coding downstream 155010 21065158 ~ 21065997 (+)
G53912 NA non-coding downstream 321202 21231350 ~ 21231697 (+)
G53913 NA non-coding downstream 321606 21231754 ~ 21232205 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 513538 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 1362387 19527897 ~ 19547507 (+)
G53520 NA other upstream 2355934 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 2989302 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 3179234 17729366 ~ 17730660 (+)
G53911 NA other downstream 258083 21168231 ~ 21168575 (+)
G53915 NA other downstream 364463 21274611 ~ 21275354 (+)
G53917 NA other downstream 382093 21292241 ~ 21293901 (+)
G54263 NA other downstream 2973169 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 3902470 24812618 ~ 24816534 (+)

Expression


Co-expression Network