G53895



Basic Information


Item Value
gene id G53895
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 21037490 ~ 21037761 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU67385
atcggcaggtgggcagggctgtgacctgggttgtggtccggcctgtggcctgggctgtggcctgggagccgcggtcggggggcctccccagCAGCGAGCTGCCGCAGACAGCCTGCGTTTCTGAGCCTGAGGTGCCACCgggtacactcgggccagctgcagggactgctccctctcctggagggtgcgcgagagcatctcctccacagaggggccaaaagtaaagcccggcgaaATACgggcgtccatgaggcgagtcttgtccgcctcag

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU67385 True 272 lncRNA 0.68 1 21037490 21037761

Neighbor


gene id symbol gene type direction distance location
AMCG00009035 nlgn1,LOC106584306 coding upstream 345103 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 576476 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 773624 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 1088055 19939076 ~ 19949435 (+)
AMCG00009026 LOC107550661,LOC107566880 coding upstream 1121584 19861278 ~ 19915906 (+)
AMCG00009042 NA coding downstream 1392579 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 1575591 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 1594956 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 1632123 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 1666425 22704186 ~ 22705397 (+)
G53886 NA non-coding upstream 63303 20973977 ~ 20974187 (+)
G53884 NA non-coding upstream 127342 20909894 ~ 20910148 (+)
G53882 NA non-coding upstream 132142 20905053 ~ 20905348 (+)
G53878 NA non-coding upstream 277620 20759669 ~ 20759870 (+)
G53877 NA non-coding upstream 302867 20734355 ~ 20734623 (+)
G53900 NA non-coding downstream 27397 21065158 ~ 21065997 (+)
G53912 NA non-coding downstream 193589 21231350 ~ 21231697 (+)
G53913 NA non-coding downstream 193993 21231754 ~ 21232205 (+)
G53938 NA non-coding downstream 535613 21573374 ~ 21573766 (+)
G53946 NA non-coding downstream 642984 21680745 ~ 21681260 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 641134 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 1489983 19527897 ~ 19547507 (+)
G53520 NA other upstream 2483530 18550772 ~ 18553960 (+)
AMCG00009009 NA other upstream 3116898 17917548 ~ 17920592 (+)
G53298 mybpc2 other upstream 3306830 17729366 ~ 17730660 (+)
G53911 NA other downstream 130470 21168231 ~ 21168575 (+)
G53915 NA other downstream 236850 21274611 ~ 21275354 (+)
G53917 NA other downstream 254480 21292241 ~ 21293901 (+)
G54263 NA other downstream 2845556 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 3774857 24812618 ~ 24816534 (+)

Expression



Co-expression Network