G53918


Basic Information

Item Value
gene id G53918
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 21292475 ~ 21293901 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67409
GTAGATAGGGTGTTCCAGGCGGGGCGGGTCTTTTTAGCACAAGCcgcatattttttttttcttattttcatagTTTAATGTTATTAGTTAGGTTAGGTTTGTTCTTCCTTTTTGTTATAACCTCCGGTAACTGGGGTTTATTGATCAAGGACCTATGCGGGATGTACCGAGCGGCTAGTATGTGACTCAGCCGAGTGAGAAGATGACTGCAGTGTAGTGGAGCCGTCAGGGATGCCAAACAGCGCACAGATGAGTGAAgagggttgtgttttttttttattggtgatGTATTAGCGACGCTtcggactgactgactgactgatgtaCGGACCTCTACTGTTTGTAAGGAAGATAACAAAAGAGTGGGGAACGGAGGACTATCCGAATGATTCGCTGTGGAGAAAAGCATTAACCCAGGATTCGTATACTGTGTGGAATGGGGGTTTGGTTTGCAGTGGTGTGCTGCGAGGCTAATATGCTGTCGGCGTCATAGCTGTGGATTTCATTCCGCGTGGTTTGTTTAGTACGTATTGTTTTTTAGTTACTGGTGGTTGATTCTGTATTCGGGATGGTGGGATTATTAAGGTGACTTTGTTTTCCAGCCTTCTCAGCTTGGTTGATCATGAATACACTGTATGGCATACTATGACTGCTTAGGCCTAAGCTTCATAAAAAACCTATACAGGATGTATGAAAGGAATGTATAAAGTTTGTAAGAGGGGGGGATAAGAACTATGCAACCATATGATGTTCCACGGAATGTTATTGGTTGTGttggctgtttatttattattttctgatgaATTGTACATTTCATTTCGTATTTGTTGAATCCCTAAtacgtatttatttttcttatttacgGAAACTGTCTTTCTTTCCTGGACACACCTGTTGGATGGCCATAGCACCTCCCTGGAATTAGGGCATTGGGAAGGGGGTTGGTAAGCCTCCCTCCCATATGTCCCTGTGATGAGTTGGGAAGGAAACATAAAGATTATTTCTCTCCCTTGGTATAGGAGACTATACCTGGCACcccagataaaataaatacgAGGGACTGCAATATCTTTGTCCTTACAACCGCCACAGATTAACATCAATGGACATCCAAATTTGATCCTAGAAAGTATACAAGGACCTGGTGGAAGAGCCACCATGCTGCCTCTTCTGTGCGTTCTAGACAATGCAGTGTGAAAACCCCTGCAGAGAGCAAGTCTGTCTGGAATATACTGTAGTACAGGGGTAGACAGGCTATTGGCATGTTTCAAAACCTGCACTGACAATAAATCTTGTTTTCAAAATCAGTtatgttatttcatatttatatacgTATTGCACTACTTACCTAGCTGAAGTTACGTCCCTTGAGCCAGAAATATGAGCACTTATTTAGAAACCCTGCATTGGGTTGAGAGAGTATTTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67409 True 1427 lncRNA 0.42 1 21292475 21293901

Neighbor

gene id symbol gene type direction distance location
AMCG00009036 NA coding downstream 550143 20741493 ~ 20742332 (-)
AMCG00009037 NA coding downstream 550989 20741291 ~ 20741486 (-)
AMCG00009031 NA coding downstream 1141983 20148097 ~ 20150492 (-)
AMCG00009030 NA coding downstream 1182275 20108946 ~ 20110200 (-)
AMCG00009028 dcun1d1,LOC107656862,LOC107722250,LOC107568628 coding downstream 1282230 19971515 ~ 20010245 (-)
AMCG00009040 NA coding upstream 423 21294324 ~ 21295469 (-)
AMCG00009039 NA coding upstream 1642 21295543 ~ 21436422 (-)
AMCG00009041 tbl1xr1,LOC103376174,LOC106584305 coding upstream 575711 21869612 ~ 22033107 (-)
AMCG00009044 LOC107578566 coding upstream 1181453 22475354 ~ 22486801 (-)
AMCG00009047 NA coding upstream 1217291 22511192 ~ 22529264 (-)
G53916 NA non-coding downstream 17134 21274730 ~ 21275341 (-)
G53899 NA non-coding downstream 229124 21063073 ~ 21063351 (-)
G53849 LOC100846954 non-coding downstream 706272 20585988 ~ 20586203 (-)
G53790 NA non-coding downstream 1192460 20099747 ~ 20100015 (-)
G53776 NA non-coding downstream 1222300 20068911 ~ 20070175 (-)
G53953 NA non-coding upstream 477745 21771646 ~ 21771991 (-)
G53955 NA non-coding upstream 514383 21808284 ~ 21808611 (-)
G53999 NA non-coding upstream 853407 22147308 ~ 22147564 (-)
G54008 NA non-coding upstream 1009707 22303608 ~ 22303893 (-)
G54078 NA non-coding upstream 1335430 22629331 ~ 22630508 (-)
G53809 NA other downstream 1020661 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 1230296 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 1322199 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 3423779 17868386 ~ 17868696 (-)
AMCG00009001 NA other downstream 3545432 17724719 ~ 17747043 (-)
G54003 LOC107575789 other upstream 889187 22183088 ~ 22183565 (-)
AMCG00009060 hltf other upstream 2531328 23825229 ~ 23863035 (-)
G54544 NA other upstream 3859365 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 3879776 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 4166705 25460606 ~ 25462690 (-)

Expression


Co-expression Network