G53938


Basic Information

Item Value
gene id G53938
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 21573374 ~ 21573766 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67430
actaaatgtagcactacgctaattatacaaaagggaaaaactaattaaaattcaactctagatcaacaaatcaaagaccatgggatcgcatatgatatcacacaaatcgttaaacaaaaaaggttataaacacattgactacaataccggttagtaagacgaaggtgagtctctcattagtattgttagtcagacattaaataactacgcaggttagtatttaatgtcaggtaacttctcgttatatatatatcagtctcatttacgtttaggtgccgagaaagatcctatcattacttgttaccacaatttcccttaactgattattggaagttggggtttagcgaatgtagagtcttttccaaacagattttccactggtttgaaggctcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67430 True 393 lncRNA 0.34 1 21573374 21573766

Neighbor

gene id symbol gene type direction distance location
AMCG00009038 NA coding upstream 486349 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 880987 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 1112360 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 1309508 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 1623939 19939076 ~ 19949435 (+)
AMCG00009042 NA coding downstream 856574 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 1039586 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 1058951 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 1096118 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 1130420 22704186 ~ 22705397 (+)
G53913 NA non-coding upstream 341169 21231754 ~ 21232205 (+)
G53912 NA non-coding upstream 341677 21231350 ~ 21231697 (+)
G53900 NA non-coding upstream 507377 21065158 ~ 21065997 (+)
G53895 NA non-coding upstream 535613 21037490 ~ 21037761 (+)
G53886 NA non-coding upstream 599187 20973977 ~ 20974187 (+)
G53946 NA non-coding downstream 106979 21680745 ~ 21681260 (+)
G53950 NA non-coding downstream 197510 21771276 ~ 21771532 (+)
G53956 NA non-coding downstream 275947 21849713 ~ 21850231 (+)
G53987 NA non-coding downstream 454918 22028684 ~ 22029096 (+)
G53988 NA non-coding downstream 455459 22029225 ~ 22029565 (+)
G53917 NA other upstream 279473 21292241 ~ 21293901 (+)
G53915 NA other upstream 298020 21274611 ~ 21275354 (+)
G53911 NA other upstream 404799 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 1177018 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 2025867 19527897 ~ 19547507 (+)
G54263 NA other downstream 2309551 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 3238852 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 3324350 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 3915945 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 4011116 25584882 ~ 25587615 (+)

Expression


Co-expression Network