Gene
RNA
| Item | Value |
|---|---|
| gene id | G53950 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 21771276 ~ 21771532 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0072329 | monocarboxylic acid catabolic process | biological_process |
| GO:0017001 | antibiotic catabolic process | biological_process |
| GO:0019541 | propionate metabolic process | biological_process |
| GO:0019543 | propionate catabolic process | biological_process |
| GO:0009062 | fatty acid catabolic process | biological_process |
| GO:0019626 | short-chain fatty acid catabolic process | biological_process |
| GO:0046459 | short-chain fatty acid metabolic process | biological_process |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67442 | True | 257 | lncRNA | 0.43 | 1 | 21771276 | 21771532 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009038 | NA | coding | upstream | 684251 | 20997898 ~ 21087025 (+) |
| AMCG00009035 | nlgn1,LOC106584306 | coding | upstream | 1078889 | 20686145 ~ 20692387 (+) |
| AMCG00009034 | nlgn1 | coding | upstream | 1310262 | 20456457 ~ 20461014 (+) |
| AMCG00009032 | NA | coding | upstream | 1507410 | 20263075 ~ 20263866 (+) |
| AMCG00009025 | atp11b | coding | upstream | 1821841 | 19939076 ~ 19949435 (+) |
| AMCG00009042 | NA | coding | downstream | 658808 | 22430340 ~ 22441467 (+) |
| AMCG00009043 | NA | coding | downstream | 841820 | 22613352 ~ 22631352 (+) |
| AMCG00009049 | trpc1 | coding | downstream | 861185 | 22632717 ~ 22648476 (+) |
| AMCG00009050 | u2surp | coding | downstream | 898352 | 22669884 ~ 22686612 (+) |
| AMCG00009052 | chst2 | coding | downstream | 932654 | 22704186 ~ 22705397 (+) |
| G53946 | NA | non-coding | upstream | 90016 | 21680745 ~ 21681260 (+) |
| G53938 | NA | non-coding | upstream | 197510 | 21573374 ~ 21573766 (+) |
| G53913 | NA | non-coding | upstream | 539071 | 21231754 ~ 21232205 (+) |
| G53912 | NA | non-coding | upstream | 539579 | 21231350 ~ 21231697 (+) |
| G53900 | NA | non-coding | upstream | 705279 | 21065158 ~ 21065997 (+) |
| G53956 | NA | non-coding | downstream | 78181 | 21849713 ~ 21850231 (+) |
| G53987 | NA | non-coding | downstream | 257152 | 22028684 ~ 22029096 (+) |
| G53988 | NA | non-coding | downstream | 257693 | 22029225 ~ 22029565 (+) |
| G53989 | NA | non-coding | downstream | 258609 | 22030141 ~ 22030434 (+) |
| G53992 | NA | non-coding | downstream | 272012 | 22043544 ~ 22044055 (+) |
| G53917 | NA | other | upstream | 477375 | 21292241 ~ 21293901 (+) |
| G53915 | NA | other | upstream | 495922 | 21274611 ~ 21275354 (+) |
| G53911 | NA | other | upstream | 602701 | 21168231 ~ 21168575 (+) |
| AMCG00009033 | nlgn1,LOC103399994,LOC102210587,LOC102311540 | other | upstream | 1374920 | 20376795 ~ 20396356 (+) |
| AMCG00009022 | dnajc19,LOC107727073 | other | upstream | 2223769 | 19527897 ~ 19547507 (+) |
| G54263 | NA | other | downstream | 2111785 | 23883317 ~ 23975906 (+) |
| AMCG00009085 | NA | other | downstream | 3041086 | 24812618 ~ 24816534 (+) |
| AMCG00009088 | LOC104966806,LOC108444346 | other | downstream | 3126584 | 24898116 ~ 24917863 (+) |
| AMCG00009104 | NA | other | downstream | 3718179 | 25489711 ~ 25493573 (+) |
| AMCG00009108 | NA | other | downstream | 3813350 | 25584882 ~ 25587615 (+) |
