G53987


Basic Information

Item Value
gene id G53987
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22028684 ~ 22029096 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67482
taattattgtaatggtCTCAGGTATTTAAGTTAGATAAAAGGACAAAtataagcacattgttttgaaagtttgacaaCTCCACACAAAACAGTATCTACACTAGGAAGTAAAGCTGATTCAGTaaacacaggagatatgatgctgctgacgacagctgagtgctgtactgaaataatttgataaATGAGATAAATTGgaatcaagattattattattttgaattgtccctTTACTAGAAACTTTAtatgccttttataaggaggatctctgatgttgtgcgaaccacacattgtgtcttcagatgactGATTTATTCCAGATATGCATATTATGAATCGTGTCCTGAAGGAACCGATGTCTGACCCGTAGTGGCAGAGGTGCATATGGAGAAGACGCTGGTGTTCTCattgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67482 True 413 lncRNA 0.36 1 22028684 22029096

Neighbor

gene id symbol gene type direction distance location
AMCG00009038 NA coding upstream 941659 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 1336297 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 1567670 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 1764818 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 2079249 19939076 ~ 19949435 (+)
AMCG00009042 NA coding downstream 401244 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 584256 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 603621 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 640788 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 675090 22704186 ~ 22705397 (+)
G53956 NA non-coding upstream 178453 21849713 ~ 21850231 (+)
G53950 NA non-coding upstream 257152 21771276 ~ 21771532 (+)
G53946 NA non-coding upstream 347424 21680745 ~ 21681260 (+)
G53938 NA non-coding upstream 454918 21573374 ~ 21573766 (+)
G53913 NA non-coding upstream 796479 21231754 ~ 21232205 (+)
G53988 NA non-coding downstream 129 22029225 ~ 22029565 (+)
G53989 NA non-coding downstream 1045 22030141 ~ 22030434 (+)
G53992 NA non-coding downstream 14448 22043544 ~ 22044055 (+)
G53995 NA non-coding downstream 76094 22105190 ~ 22105403 (+)
G54000 NA non-coding downstream 118775 22147871 ~ 22148426 (+)
G53917 NA other upstream 734783 21292241 ~ 21293901 (+)
G53915 NA other upstream 753330 21274611 ~ 21275354 (+)
G53911 NA other upstream 860109 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 1632328 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 2481177 19527897 ~ 19547507 (+)
G54263 NA other downstream 1854221 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2783522 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2869020 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 3460615 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 3555786 25584882 ~ 25587615 (+)

Expression


Co-expression Network