G53989


Basic Information

Item Value
gene id G53989
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22030141 ~ 22030434 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67484
AGCAGTGGAGAGACAAAATGGGATATTAAAGAATAAGCTGgctaaaatatgcaaacaaacaggACTCAAACGTCCAGATGCCCTACCTATAGTCCTAATGACAATGAGATCGTCAgccaaaaaaaacactggtcTTCCTTCGTGTGAGATTATTATGGGATGACTTATGAGACTCTCCATCACTCCTCCATTGTCTGTAAGGGAAATGGACATCCACTTGATGGATGATGCTATGTTGTCTTTCCATATGGGACTAACACGTGCATTCAaagctgtccattcacaggTGAAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67484 True 294 lncRNA 0.42 1 22030141 22030434

Neighbor

gene id symbol gene type direction distance location
AMCG00009038 NA coding upstream 943116 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 1337754 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 1569127 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 1766275 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 2080706 19939076 ~ 19949435 (+)
AMCG00009042 NA coding downstream 399906 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 582918 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 602283 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 639450 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 673752 22704186 ~ 22705397 (+)
G53988 NA non-coding upstream 576 22029225 ~ 22029565 (+)
G53987 NA non-coding upstream 1045 22028684 ~ 22029096 (+)
G53956 NA non-coding upstream 179910 21849713 ~ 21850231 (+)
G53950 NA non-coding upstream 258609 21771276 ~ 21771532 (+)
G53946 NA non-coding upstream 348881 21680745 ~ 21681260 (+)
G53992 NA non-coding downstream 13110 22043544 ~ 22044055 (+)
G53995 NA non-coding downstream 74756 22105190 ~ 22105403 (+)
G54000 NA non-coding downstream 117437 22147871 ~ 22148426 (+)
G54030 NA non-coding downstream 489432 22519866 ~ 22528083 (+)
G54031 NA non-coding downstream 490622 22521056 ~ 22542762 (+)
G53917 NA other upstream 736240 21292241 ~ 21293901 (+)
G53915 NA other upstream 754787 21274611 ~ 21275354 (+)
G53911 NA other upstream 861566 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 1633785 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 2482634 19527897 ~ 19547507 (+)
G54263 NA other downstream 1852883 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2782184 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2867682 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 3459277 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 3554448 25584882 ~ 25587615 (+)

Expression


Co-expression Network