G54000


Basic Information

Item Value
gene id G54000
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22147871 ~ 22148426 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67496
tggcaacagggtagtgaatttatgaatagcagtgggatttaggcagcgagtttctatattcctctcctgtgtgtctgattctactccaggcagctcaaatgtaataaggcagtggtcggaaatcgtctggttttggggtgatattattaggttgtgaatctgtaccccacgggtaataactagatctagtgtgtgattgtgacgatgtgtgggtccagacacatgctgagtgaagcctacagactccaatagggacaagaaactaacagtgagggggtcgtctttaatgtcaatatgtatgttaaagtcccccaaaataatgagtttatcataatgtatggctaagtcagataagagattgctaaattcggtcataaaaaaggaataggggcctggtggcctataaatagctataagctgaagaggtggattaagcctaagttctacctggtgaatttcaaaagatgtgaagctgtctaatggcttagtaGACAGGCGCAGGTCTGTGCGGTAGATGGTGGCCAGCTCCCCCCCACGGCCTGTTGTACGGGCCTTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67496 True 556 lncRNA 0.45 1 22147871 22148426

Neighbor

gene id symbol gene type direction distance location
AMCG00009038 NA coding upstream 1060846 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 1455484 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 1686857 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 1884005 20263075 ~ 20263866 (+)
AMCG00009025 atp11b coding upstream 2198436 19939076 ~ 19949435 (+)
AMCG00009042 NA coding downstream 281914 22430340 ~ 22441467 (+)
AMCG00009043 NA coding downstream 464926 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 484291 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 521458 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 555760 22704186 ~ 22705397 (+)
G53995 NA non-coding upstream 42468 22105190 ~ 22105403 (+)
G53992 NA non-coding upstream 103816 22043544 ~ 22044055 (+)
G53989 NA non-coding upstream 117437 22030141 ~ 22030434 (+)
G53988 NA non-coding upstream 118306 22029225 ~ 22029565 (+)
G53987 NA non-coding upstream 118775 22028684 ~ 22029096 (+)
G54030 NA non-coding downstream 371440 22519866 ~ 22528083 (+)
G54031 NA non-coding downstream 372630 22521056 ~ 22542762 (+)
G54032 NA non-coding downstream 386167 22534593 ~ 22603477 (+)
G54063 NA non-coding downstream 541512 22689938 ~ 22691180 (+)
G54101 NA non-coding downstream 558715 22707141 ~ 22707844 (+)
G53917 NA other upstream 853970 21292241 ~ 21293901 (+)
G53915 NA other upstream 872517 21274611 ~ 21275354 (+)
G53911 NA other upstream 979296 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 1751515 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 2600364 19527897 ~ 19547507 (+)
G54263 NA other downstream 1734891 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2664192 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2749690 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 3341285 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 3436456 25584882 ~ 25587615 (+)

Expression


Co-expression Network