Gene
RNA
| Item | Value |
|---|---|
| gene id | G54003 |
| gene name | LOC107575789 |
| gene type | unknown |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 22183088 ~ 22183565 (-) |
| genome version | AmiCal1_2021_bowfin_Genome |
| description |
|---|
| PREDICTED: receptor-type tyrosine-protein phosphatase zeta-like |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67499 | True | 478 | TUCP | 0.49 | 1 | 22183088 | 22183565 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009041 | tbl1xr1,LOC103376174,LOC106584305 | coding | downstream | 149981 | 21869612 ~ 22033107 (-) |
| AMCG00009039 | NA | coding | downstream | 746666 | 21295543 ~ 21436422 (-) |
| AMCG00009040 | NA | coding | downstream | 887619 | 21294324 ~ 21295469 (-) |
| AMCG00009036 | NA | coding | downstream | 1440756 | 20741493 ~ 20742332 (-) |
| AMCG00009037 | NA | coding | downstream | 1441602 | 20741291 ~ 20741486 (-) |
| AMCG00009044 | LOC107578566 | coding | upstream | 291789 | 22475354 ~ 22486801 (-) |
| AMCG00009047 | NA | coding | upstream | 327627 | 22511192 ~ 22529264 (-) |
| AMCG00009046 | xrn1,LOC107563287,LOC107710613 | coding | upstream | 357182 | 22540747 ~ 22556988 (-) |
| AMCG00009045 | atr,LOC107677746,LOC107700496 | coding | upstream | 375964 | 22559529 ~ 22606887 (-) |
| AMCG00009048 | pcolce2,pcolce2b,LOC107588030 | coding | upstream | 465129 | 22648694 ~ 22666185 (-) |
| G53999 | NA | non-coding | downstream | 35524 | 22147308 ~ 22147564 (-) |
| G53955 | NA | non-coding | downstream | 374477 | 21808284 ~ 21808611 (-) |
| G53953 | NA | non-coding | downstream | 411097 | 21771646 ~ 21771991 (-) |
| G53918 | NA | non-coding | downstream | 889187 | 21292475 ~ 21293901 (-) |
| G53916 | NA | non-coding | downstream | 907747 | 21274730 ~ 21275341 (-) |
| G54008 | NA | non-coding | upstream | 120043 | 22303608 ~ 22303893 (-) |
| G54078 | NA | non-coding | upstream | 445766 | 22629331 ~ 22630508 (-) |
| G54124 | NA | non-coding | upstream | 609447 | 22793012 ~ 22826612 (-) |
| G54139 | NA | non-coding | upstream | 792896 | 22976461 ~ 22976682 (-) |
| G54161 | NA | non-coding | upstream | 955890 | 23139455 ~ 23139692 (-) |
| G53809 | NA | other | downstream | 1911274 | 20179799 ~ 20271814 (-) |
| AMCG00009027 | NA | other | downstream | 2120909 | 20061524 ~ 20062179 (-) |
| AMCG00009029 | NA | other | downstream | 2212812 | 19961027 ~ 19970276 (-) |
| G53355 | lrrc4b,LOC107677294,LOC107556667 | other | downstream | 4314392 | 17868386 ~ 17868696 (-) |
| AMCG00009001 | NA | other | downstream | 4436045 | 17724719 ~ 17747043 (-) |
| AMCG00009060 | hltf | other | upstream | 1641664 | 23825229 ~ 23863035 (-) |
| G54544 | NA | other | upstream | 2969701 | 25153266 ~ 25156338 (-) |
| AMCG00009100 | NA | other | upstream | 2990112 | 25173677 ~ 25176378 (-) |
| AMCG00009106 | NA | other | upstream | 3277041 | 25460606 ~ 25462690 (-) |
| AMCG00009105 | NA | other | upstream | 3346264 | 25529829 ~ 25531566 (-) |
