G54031



Basic Information


Item Value
gene id G54031
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information


Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22521056 ~ 22542762 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence


>TU67532
tcatagTAAATATATGAGGAATGCAGCATTACAGATCAAGTGTTgtatgattactattacgtgtgttatgttgttatgggatatacatgtacacaaatacacagtatgatttaccgtcacaacaataacacaagtaatagtaatcacgcaacacatgcggtGTAAAACGAATAGATTCAAGTAGATTTAACACATCTGGGATTATAGTGGCGCATtcaacatctgctagacaggtgCATTTCTTCTCTGACGGTCACGTTTTCCTATCGTCACACAATATAGATCGTCATATCACAGCCCTACATAAAACTAATgtttagatacattttaaactgcccATCCCAGTAATCTGGTTTTCATTGCAGCTGGACTCTCACACTACTCACTATTAATGAGTATAAACAGATCTATTACCTTACATATATCTATTATTTTCAAGAGGGAATTGTTTCTTTGGGGGGTAATTAGatctccagagagagagagcagcaaaGTACTACAAATATGTGATTAAgcaaatttgtttgtttaataactgGGTGGTaccttaatcccatagaaaatctgtggagggagctgaaggttcgagttgccaaacgtcagcctcgaaaccttaatgacttggagaggatctgcaaagaggagtgggacaaaatccctcctgagatgtgtgcaaacctggtggccaactacaagaaacgtctgacctctgcgattgccaacaagggttttgccaccaagtactaagtcgaaggggtcaaatacttatttccctcattaacatgcaaatcaatttataacttttatgaaatgcgtttttctggattttttttatttttattctgtctctcactgttaaaatacacctaccataaaaattatagactgatcatttcttt

Function


GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU67532 True 899 lncRNA 0.37 2 22521056 22542762
Loading

Neighbor


gene id symbol gene type direction distance location
AMCG00009042 NA coding upstream 79589 22430340 ~ 22441467 (+)
AMCG00009038 NA coding upstream 1434031 20997898 ~ 21087025 (+)
AMCG00009035 nlgn1,LOC106584306 coding upstream 1828669 20686145 ~ 20692387 (+)
AMCG00009034 nlgn1 coding upstream 2060042 20456457 ~ 20461014 (+)
AMCG00009032 NA coding upstream 2257190 20263075 ~ 20263866 (+)
AMCG00009043 NA coding downstream 70590 22613352 ~ 22631352 (+)
AMCG00009049 trpc1 coding downstream 89955 22632717 ~ 22648476 (+)
AMCG00009050 u2surp coding downstream 127122 22669884 ~ 22686612 (+)
AMCG00009052 chst2 coding downstream 161424 22704186 ~ 22705397 (+)
AMCG00009053 LOC104937275,LOC102787465 coding downstream 308229 22850991 ~ 22854494 (+)
G54000 NA non-coding upstream 372630 22147871 ~ 22148426 (+)
G53995 NA non-coding upstream 415653 22105190 ~ 22105403 (+)
G53992 NA non-coding upstream 477001 22043544 ~ 22044055 (+)
G53989 NA non-coding upstream 490622 22030141 ~ 22030434 (+)
G53988 NA non-coding upstream 491491 22029225 ~ 22029565 (+)
G54063 NA non-coding downstream 147176 22689938 ~ 22691180 (+)
G54101 NA non-coding downstream 164379 22707141 ~ 22707844 (+)
G54112 NA non-coding downstream 235613 22778375 ~ 22857522 (+)
G54116 NA non-coding downstream 263477 22806239 ~ 22810596 (+)
G54138 NA non-coding downstream 433699 22976461 ~ 22976682 (+)
G53917 NA other upstream 1227155 21292241 ~ 21293901 (+)
G53915 NA other upstream 1245702 21274611 ~ 21275354 (+)
G53911 NA other upstream 1352481 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2124700 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 2973549 19527897 ~ 19547507 (+)
G54263 NA other downstream 1340555 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 2269856 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 2355354 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2946949 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 3042120 25584882 ~ 25587615 (+)

Expression


G54031 Expression in all Baseline Samples

Bar chart with 16 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 10.
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G54031 Expression in each Bioproject

Bar chart with 7 bars.
G54031 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 30.
End of interactive chart.

Co-expression Network