Gene
RNA
| Item | Value |
|---|---|
| gene id | G54112 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 22778375 ~ 22857522 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016881 | acid-amino acid ligase activity | molecular_function |
| id | description |
|---|---|
| ko04146 | Peroxisome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67644 | True | 703 | lncRNA | 0.32 | 2 | 22778375 | 22857522 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009052 | chst2 | coding | upstream | 72978 | 22704186 ~ 22705397 (+) |
| AMCG00009050 | u2surp | coding | upstream | 91763 | 22669884 ~ 22686612 (+) |
| AMCG00009049 | trpc1 | coding | upstream | 129899 | 22632717 ~ 22648476 (+) |
| AMCG00009043 | NA | coding | upstream | 147023 | 22613352 ~ 22631352 (+) |
| AMCG00009042 | NA | coding | upstream | 336908 | 22430340 ~ 22441467 (+) |
| AMCG00009056 | zic1 | coding | downstream | 800679 | 23658201 ~ 23662213 (+) |
| AMCG00009058 | NA | coding | downstream | 959303 | 23816825 ~ 23825087 (+) |
| AMCG00009059 | NA | coding | downstream | 967700 | 23825222 ~ 23840982 (+) |
| AMCG00009061 | NA | coding | downstream | 1015186 | 23872708 ~ 23885824 (+) |
| AMCG00009064 | stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 | coding | downstream | 1171870 | 24029392 ~ 24049944 (+) |
| G54101 | NA | non-coding | upstream | 70531 | 22707141 ~ 22707844 (+) |
| G54063 | NA | non-coding | upstream | 87195 | 22689938 ~ 22691180 (+) |
| G54032 | NA | non-coding | upstream | 174898 | 22534593 ~ 22603477 (+) |
| G54031 | NA | non-coding | upstream | 235613 | 22521056 ~ 22542762 (+) |
| G54030 | NA | non-coding | upstream | 250292 | 22519866 ~ 22528083 (+) |
| G54138 | NA | non-coding | downstream | 118939 | 22976461 ~ 22976682 (+) |
| G54166 | NA | non-coding | downstream | 311919 | 23169441 ~ 23191582 (+) |
| G54174 | NA | non-coding | downstream | 377101 | 23234623 ~ 23235029 (+) |
| G54194 | NA | non-coding | downstream | 589632 | 23447154 ~ 23449477 (+) |
| G54237 | NA | non-coding | downstream | 805871 | 23663393 ~ 23664094 (+) |
| G53917 | NA | other | upstream | 1484474 | 21292241 ~ 21293901 (+) |
| G53915 | NA | other | upstream | 1503021 | 21274611 ~ 21275354 (+) |
| G53911 | NA | other | upstream | 1609800 | 21168231 ~ 21168575 (+) |
| AMCG00009033 | nlgn1,LOC103399994,LOC102210587,LOC102311540 | other | upstream | 2382019 | 20376795 ~ 20396356 (+) |
| AMCG00009022 | dnajc19,LOC107727073 | other | upstream | 3230868 | 19527897 ~ 19547507 (+) |
| G54263 | NA | other | downstream | 1025795 | 23883317 ~ 23975906 (+) |
| AMCG00009085 | NA | other | downstream | 1955096 | 24812618 ~ 24816534 (+) |
| AMCG00009088 | LOC104966806,LOC108444346 | other | downstream | 2040594 | 24898116 ~ 24917863 (+) |
| AMCG00009104 | NA | other | downstream | 2632189 | 25489711 ~ 25493573 (+) |
| AMCG00009108 | NA | other | downstream | 2727360 | 25584882 ~ 25587615 (+) |
