G54124


Basic Information

Item Value
gene id G54124
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22793012 ~ 22826612 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67662
TGAATTGCTGAACAATGGATTTCGGCACAGCTGCTTTGAACTAGTGTGCACCCCCAACCCACCTCTGTCTGGggctccatgcaagatctcacctcgtggagtttcaatgatcatgagaacagtgaggaatcagcccagaactacatgggaggatcttgttaatgatctcaaggcagctgggaccatagtcaccaagaaaacaattggtaacacactactccgtgaaggactgaaatcctgcagcacccgcaaggtccccctgctcaagaaagcacatgtacaggcccgtcaggcacatctgaatgattcagaggagaactgggtgaaagtgttgtggtcagatgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67662 True 346 lncRNA 0.50 2 22793012 22826612

Neighbor

gene id symbol gene type direction distance location
AMCG00009048 pcolce2,pcolce2b,LOC107588030 coding downstream 126827 22648694 ~ 22666185 (-)
AMCG00009045 atr,LOC107677746,LOC107700496 coding downstream 186125 22559529 ~ 22606887 (-)
AMCG00009046 xrn1,LOC107563287,LOC107710613 coding downstream 236024 22540747 ~ 22556988 (-)
AMCG00009047 NA coding downstream 263748 22511192 ~ 22529264 (-)
AMCG00009044 LOC107578566 coding downstream 306211 22475354 ~ 22486801 (-)
AMCG00009054 plod2 coding upstream 551995 23378607 ~ 23402492 (-)
AMCG00009055 si:ch73-206p6.1,LOC107557560,LOC107679633,LOC107739143,LOC108272643 coding upstream 623933 23450545 ~ 23469100 (-)
AMCG00009057 zic4,LOC107588037,LOC101481722,LOC102208739,LOC100703503,LOC107757405,LOC107557562 coding upstream 818842 23645454 ~ 23656150 (-)
AMCG00009062 nck1b,nck1,LOC107734380,LOC107683484,LOC107713805,LOC107588047 coding upstream 1067482 23894094 ~ 23914458 (-)
AMCG00009063 slc35g2,slc35g2b,LOC108263162,LOC107588046,LOC107687509,LOC103026733 coding upstream 1133987 23960599 ~ 23961852 (-)
G54078 NA non-coding downstream 162504 22629331 ~ 22630508 (-)
G54008 NA non-coding downstream 489119 22303608 ~ 22303893 (-)
G53999 NA non-coding downstream 645448 22147308 ~ 22147564 (-)
G53955 NA non-coding downstream 984401 21808284 ~ 21808611 (-)
G53953 NA non-coding downstream 1021021 21771646 ~ 21771991 (-)
G54139 NA non-coding upstream 149849 22976461 ~ 22976682 (-)
G54161 NA non-coding upstream 312843 23139455 ~ 23139692 (-)
G54167 LOC103376870 non-coding upstream 342827 23169439 ~ 23169829 (-)
G54168 NA non-coding upstream 353715 23180327 ~ 23191495 (-)
G54179 NA non-coding upstream 475842 23302454 ~ 23302685 (-)
G54003 LOC107575789 other downstream 609447 22183088 ~ 22183565 (-)
G53809 NA other downstream 2521198 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 2730833 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 2822736 19961027 ~ 19970276 (-)
G53355 lrrc4b,LOC107677294,LOC107556667 other downstream 4924316 17868386 ~ 17868696 (-)
AMCG00009060 hltf other upstream 998617 23825229 ~ 23863035 (-)
G54544 NA other upstream 2326654 25153266 ~ 25156338 (-)
AMCG00009100 NA other upstream 2347065 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 2633994 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 2703217 25529829 ~ 25531566 (-)

Expression


Co-expression Network