G54138


Basic Information

Item Value
gene id G54138
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 22976461 ~ 22976682 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67676
gtagcagaaggcagtttgtttgccgaagggctggagagcggtacacgaatgagtgtctgcaggcaacagtgaagcatggtggaggttccttgcaagtttggggctgcatttctgcaaatggagttggggatttggtcagaatgaatggtctcctcaatgctgagaagtacaggcagatacttatccatcatgcaataccatcagggaggcatctgattggcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67676 True 222 lncRNA 0.50 1 22976461 22976682

Neighbor

gene id symbol gene type direction distance location
AMCG00009053 LOC104937275,LOC102787465 coding upstream 121967 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 271064 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 289849 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 327985 22632717 ~ 22648476 (+)
AMCG00009043 NA coding upstream 345109 22613352 ~ 22631352 (+)
AMCG00009056 zic1 coding downstream 681519 23658201 ~ 23662213 (+)
AMCG00009058 NA coding downstream 840143 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 848540 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 896026 23872708 ~ 23885824 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 1052710 24029392 ~ 24049944 (+)
G54112 NA non-coding upstream 118939 22778375 ~ 22857522 (+)
G54116 NA non-coding upstream 165865 22806239 ~ 22810596 (+)
G54101 NA non-coding upstream 268617 22707141 ~ 22707844 (+)
G54063 NA non-coding upstream 285281 22689938 ~ 22691180 (+)
G54032 NA non-coding upstream 372984 22534593 ~ 22603477 (+)
G54166 NA non-coding downstream 192759 23169441 ~ 23191582 (+)
G54174 NA non-coding downstream 257941 23234623 ~ 23235029 (+)
G54194 NA non-coding downstream 470472 23447154 ~ 23449477 (+)
G54237 NA non-coding downstream 686711 23663393 ~ 23664094 (+)
G54238 NA non-coding downstream 687475 23664157 ~ 23664652 (+)
G53917 NA other upstream 1682560 21292241 ~ 21293901 (+)
G53915 NA other upstream 1701107 21274611 ~ 21275354 (+)
G53911 NA other upstream 1807886 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2580105 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3428954 19527897 ~ 19547507 (+)
G54263 NA other downstream 906635 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 1835936 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1921434 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2513029 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2608200 25584882 ~ 25587615 (+)

Expression


Co-expression Network