G54174


Basic Information

Item Value
gene id G54174
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23234623 ~ 23235029 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67717
gggtgtaattggataagagcatttgggctctgagctgaagcactgatctaaagaagacctctccccccacaaagttatcagatttccttagctcatcagcttggaactggtttgcatcaaagtgacagttttggggaggatggcaccgagaagaggccaaatagtttggaattctgctatgagatgtctggagaaaggggcctgtaggtgataaaaactctttgaagtggatgagagccaaaatcccgacatagagctacgaacccaggccaaccggcatttccaaaagatggcatggattgacatcagtcataaatcaagcccccctccaataggacactgggggctgaaaccgaaatccaatctcaagaactcagggaccaatcacctattgatctgacagacta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67717 True 407 lncRNA 0.47 1 23234623 23235029

Neighbor

gene id symbol gene type direction distance location
AMCG00009053 LOC104937275,LOC102787465 coding upstream 380129 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 529226 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 548011 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 586147 22632717 ~ 22648476 (+)
AMCG00009043 NA coding upstream 603271 22613352 ~ 22631352 (+)
AMCG00009056 zic1 coding downstream 423172 23658201 ~ 23662213 (+)
AMCG00009058 NA coding downstream 581796 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 590193 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 637679 23872708 ~ 23885824 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 794363 24029392 ~ 24049944 (+)
G54166 NA non-coding upstream 43041 23169441 ~ 23191582 (+)
G54138 NA non-coding upstream 257941 22976461 ~ 22976682 (+)
G54112 NA non-coding upstream 377101 22778375 ~ 22857522 (+)
G54116 NA non-coding upstream 424027 22806239 ~ 22810596 (+)
G54101 NA non-coding upstream 526779 22707141 ~ 22707844 (+)
G54194 NA non-coding downstream 212125 23447154 ~ 23449477 (+)
G54237 NA non-coding downstream 428364 23663393 ~ 23664094 (+)
G54238 NA non-coding downstream 429128 23664157 ~ 23664652 (+)
G54264 NA non-coding downstream 655098 23890127 ~ 23894287 (+)
G54328 NA non-coding downstream 930761 24165790 ~ 24166061 (+)
G53917 NA other upstream 1940722 21292241 ~ 21293901 (+)
G53915 NA other upstream 1959269 21274611 ~ 21275354 (+)
G53911 NA other upstream 2066048 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 2838267 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3687116 19527897 ~ 19547507 (+)
G54263 NA other downstream 648288 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 1577589 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1663087 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2254682 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2349853 25584882 ~ 25587615 (+)

Expression


Co-expression Network