G54194


Basic Information

Item Value
gene id G54194
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23447154 ~ 23449477 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67740
GGCCATTTCTCTGCAATGTGTATTCATATAACCGCTTCACTGTGTTTGCTCCATTATAGCACAGGTCACATCCAAAGTATTCCTGGTTAAAATAACAATGTCATAACTGTGCTGCCTCTCAACAGCTTGTACTTATCCACCAAGCTTTTGCACAAGTGAGAAAAAAGGCACAGCTGTATGATTCACATTACCCTCAATTCTAAGTTGGTTGTTCAcaaaccaaaattaaacaaataaaattaatagaCCTTACAGTCATACAATTTTatggtgtgttttttatatatataatacatacaaaaagagCTGAGTCTGTACATTGTGcagatttgatttgtttgacaGACTGGCTATGgaattatgaagaaaaaataacacaataaaaaatgtacagagcTAAAGAATATATGGCTAAAAggtcaaataaaaacatcttggcAGTACCAAAAATTGTCAAGTTCAATTCGATTGGCTGTTTCGGTTCATCTACACTTTTAAGCACAATCAAATTTTCACATTGCAAATCCAAACATCTCTGCTTACACTTCACAGTTACAGCAGAAATCTAGGTTTGGCATAAGCACAGGGACTGGTTCCCAGACTTTCACTTTCTGGCTCAAGAATGACTGACCAGGCCAGACTATTGggttcaaaaaacaaaacgacaacaacaaaaacaacaactagtACTAGCCATTTCTCAAAAGTTTAAATTTTTTGAGTTGTTATTTTAACCTTGAACATATGTATGTTGTATCTCTTATTTAACACAAGAAAGAAGGACAATTTGCGAAAGTAAATTTGTCTCAGCCAAGCCTTGTTAATATATTGGTAAGTTATTTTGATTACATAGTATGTTttaagaactgaaaaaaaaacagaacagaatttctttaaaaacatgccTAAatcttaatgcatttatttaatatgacaCCTGAAAAAAGCGATCCTGATTGCAAATGTCAGCTTTTAGGTAagtgcaataaaacataatcataacatgcaaaataatcatATTGTAGTTTTTTCATTACATGCAGTACTTCTGATTGATCCAATTTGCCCAGGGCACATGATTTTACTTAAAACCACTGCATAATGCTCagttaaagcattttaattaaaacagtataGAATTTTCACCAgtgtttcatttaaaagtaaaaggttACACAGTTTTATAGAGGACTGACAAAAAACATAGGATTAGTACACAAAGTTACATTGGAGAACAATTGTTGTTACATCTTCTCTATAGAAGTGATAGTATTTCAGCTATTTTAACAGTGGTgccaacatacatttaattgttttaatacctCAAGAAAAAATCTTAAGAAAAATCTTAAACATCTGTTTACAGAAATCAGTTAGTCACTTGGGTCAGTCTGATCTGATTTTAATCCTCATATAACCACATACTCCAGTGGTATAATGTAACATAGCACTAAAACTGGCTAGAAACAGAGGAGTGGTTTAGCCATTagtgttttaataaagaacaaTCATATATCAGAATACAACCTATATAAATACTTGTAAAACTGGCtcatatgtatttcattatacagttcagttaaattaaagttgatgtttaacttaaataaaactaacatgaaaaacagacaaCTGCTTTGAATTTCCAAATTCAAACAGAACAGTATGAAATTTGTTAAACATTGCAATATCTTAGGCAATAgacataaatatgaaaaaatgtgaaattttatgcagtttttttGTGACCATAAACTGTAGTGCTTGCATTTTCAAGAGGCTGTTAGGATACCCAAGTATGCCTAAAAATTATgtgcagaggagagagaaaaattatataaaaataatggattaaattaagACTTTGTATTTCTATAAAATGGCCTTCCCAGAACACAGTCAACATTGTAAAACTTCATAatagtttgtatatatgtaatatctACAGTATACAGTAATAAGGTCTTTCTCAGAAATGCAAACCCTAATATCTGTGGCTTGCATTTTGGGCATGCATTAGGCTGCCCTACATGACATATGTCAGGTTCTCCTCTTTACATGTATAAGCATATATACAAGATACATATAAAAGGCTCCAGTTTCCCAGCCAGAGTGCTGCAGCACATTGGTGTGCCTTCAGCCATGTACagccattaaatattaattaaatcaacatGAATAAGTTCCTGACAGAATTCAAAGTTAATATGCcacacaatattttgtattaagctGTGCCTGTGAATCCTCACTTCATAAAGGGATAAAGAAAGACtagctttaaatatatatatatatatatatatatatatatatatatatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67740 True 2324 lncRNA 0.31 1 23447154 23449477

Neighbor

gene id symbol gene type direction distance location
AMCG00009053 LOC104937275,LOC102787465 coding upstream 592660 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 741757 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 760542 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 798678 22632717 ~ 22648476 (+)
AMCG00009043 NA coding upstream 815802 22613352 ~ 22631352 (+)
AMCG00009056 zic1 coding downstream 208724 23658201 ~ 23662213 (+)
AMCG00009058 NA coding downstream 367348 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 375745 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 423231 23872708 ~ 23885824 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 579915 24029392 ~ 24049944 (+)
G54174 NA non-coding upstream 212125 23234623 ~ 23235029 (+)
G54166 NA non-coding upstream 255572 23169441 ~ 23191582 (+)
G54138 NA non-coding upstream 470472 22976461 ~ 22976682 (+)
G54112 NA non-coding upstream 589632 22778375 ~ 22857522 (+)
G54116 NA non-coding upstream 636558 22806239 ~ 22810596 (+)
G54237 NA non-coding downstream 213916 23663393 ~ 23664094 (+)
G54238 NA non-coding downstream 214680 23664157 ~ 23664652 (+)
G54264 NA non-coding downstream 440650 23890127 ~ 23894287 (+)
G54328 NA non-coding downstream 716313 24165790 ~ 24166061 (+)
G54356 NA non-coding downstream 828428 24277905 ~ 24278561 (+)
G53917 NA other upstream 2153253 21292241 ~ 21293901 (+)
G53915 NA other upstream 2171800 21274611 ~ 21275354 (+)
G53911 NA other upstream 2278579 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3050798 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 3899647 19527897 ~ 19547507 (+)
G54263 NA other downstream 433840 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 1363141 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1448639 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 2040234 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 2135405 25584882 ~ 25587615 (+)

Expression


Co-expression Network