G54237


Basic Information

Item Value
gene id G54237
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23663393 ~ 23664094 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67786
CTCtaattatgaaatatgtatgaTGGTTTGCCGATACAAAAAAATGGGTTTTCAACAgcttattggtttatttattttatttttattttttttaattttaatttttctgatcaaaaaatgaaatgtttatgtgATGTTTTCCCCATCTGTCAATTACTTCTTGACCGCTCCCTATTGGTTTTCTACAAAATCAAATTCAGTAAAacgaattattttaaagtaatttaattttcttttcgtCTCTCCTTTATTTGTTCACAATTAACATCGAAGTCATTCTTCTGAGTGATAGGACAACAACAATCGGTAAATGgcataattttataaataagatTACTCCTGTCTAATAACTGCTAAACGCTCGtttcttgaaaacaaattcaGTTTCACGTTGTTTGGTTTGATAGATTTGCAACAATACTGCGACTACTAACTTAGCTACGGTTGGAGTAACTGTTAAGCTTTGTTCTTCGCTGTAGCTTGCTTGACCGCCCCATTAAGCAGACAGCACATCAACAGACTCCAGCGGTCATGAGCCTGGCTAACACTGCTAGTTCTCGTGGGGTGGCACAGAATGGGTTTCACAAGCTTGCTCTTCGGCAGACAAGACTGACACATTTAACGacttcatatgtgtgtgtgtatatatatatatatatatatatcaacacatctgtacacacacacacacacacactatat

Function

GO:

id name namespace
GO:0005540 hyaluronic acid binding molecular_function
GO:0005179 hormone activity molecular_function
GO:0031406 carboxylic acid binding molecular_function
GO:0043177 organic acid binding molecular_function

KEGG:

id description
ko05014 Amyotrophic lateral sclerosis

RNA

RNA id representative length rna type GC content exon number start site end site
TU67786 True 702 lncRNA 0.34 1 23663393 23664094

Neighbor

gene id symbol gene type direction distance location
AMCG00009056 zic1 coding upstream 1180 23658201 ~ 23662213 (+)
AMCG00009053 LOC104937275,LOC102787465 coding upstream 808899 22850991 ~ 22854494 (+)
AMCG00009052 chst2 coding upstream 957996 22704186 ~ 22705397 (+)
AMCG00009050 u2surp coding upstream 976781 22669884 ~ 22686612 (+)
AMCG00009049 trpc1 coding upstream 1014917 22632717 ~ 22648476 (+)
AMCG00009058 NA coding downstream 152731 23816825 ~ 23825087 (+)
AMCG00009059 NA coding downstream 161128 23825222 ~ 23840982 (+)
AMCG00009061 NA coding downstream 208614 23872708 ~ 23885824 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 365298 24029392 ~ 24049944 (+)
AMCG00009066 NA coding downstream 399748 24063842 ~ 24071730 (+)
G54194 NA non-coding upstream 213916 23447154 ~ 23449477 (+)
G54174 NA non-coding upstream 428364 23234623 ~ 23235029 (+)
G54166 NA non-coding upstream 471811 23169441 ~ 23191582 (+)
G54138 NA non-coding upstream 686711 22976461 ~ 22976682 (+)
G54112 NA non-coding upstream 805871 22778375 ~ 22857522 (+)
G54238 NA non-coding downstream 63 23664157 ~ 23664652 (+)
G54264 NA non-coding downstream 226033 23890127 ~ 23894287 (+)
G54328 NA non-coding downstream 501696 24165790 ~ 24166061 (+)
G54356 NA non-coding downstream 613811 24277905 ~ 24278561 (+)
G54430 NA non-coding downstream 1119416 24783510 ~ 24787085 (+)
G53917 NA other upstream 2369492 21292241 ~ 21293901 (+)
G53915 NA other upstream 2388039 21274611 ~ 21275354 (+)
G53911 NA other upstream 2494818 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3267037 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 4115886 19527897 ~ 19547507 (+)
G54263 NA other downstream 219223 23883317 ~ 23975906 (+)
AMCG00009085 NA other downstream 1148524 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1234022 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1825617 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1920788 25584882 ~ 25587615 (+)

Expression


Co-expression Network