Gene
RNA
| Item | Value |
|---|---|
| gene id | G54238 |
| gene name | NA |
| gene type | non-coding |
| species | bowfin (Amia calva) |
| category of species | ecological fish |
| Item | Value |
|---|---|
| chromosome id | CM030126.1 |
| NCBI id | CM030126.1 |
| chromosome length | 46242406 |
| location | 23664157 ~ 23664652 (+) |
| genome version | AmiCal1_2021_bowfin_Genome |
| id | name | namespace |
|---|---|---|
| GO:0005540 | hyaluronic acid binding | molecular_function |
| GO:0031406 | carboxylic acid binding | molecular_function |
| GO:0043177 | organic acid binding | molecular_function |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU67787 | True | 496 | lncRNA | 0.33 | 1 | 23664157 | 23664652 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| AMCG00009056 | zic1 | coding | upstream | 1944 | 23658201 ~ 23662213 (+) |
| AMCG00009053 | LOC104937275,LOC102787465 | coding | upstream | 809663 | 22850991 ~ 22854494 (+) |
| AMCG00009052 | chst2 | coding | upstream | 958760 | 22704186 ~ 22705397 (+) |
| AMCG00009050 | u2surp | coding | upstream | 977545 | 22669884 ~ 22686612 (+) |
| AMCG00009049 | trpc1 | coding | upstream | 1015681 | 22632717 ~ 22648476 (+) |
| AMCG00009058 | NA | coding | downstream | 152173 | 23816825 ~ 23825087 (+) |
| AMCG00009059 | NA | coding | downstream | 160570 | 23825222 ~ 23840982 (+) |
| AMCG00009061 | NA | coding | downstream | 208056 | 23872708 ~ 23885824 (+) |
| AMCG00009064 | stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 | coding | downstream | 364740 | 24029392 ~ 24049944 (+) |
| AMCG00009066 | NA | coding | downstream | 399190 | 24063842 ~ 24071730 (+) |
| G54237 | NA | non-coding | upstream | 63 | 23663393 ~ 23664094 (+) |
| G54194 | NA | non-coding | upstream | 214680 | 23447154 ~ 23449477 (+) |
| G54174 | NA | non-coding | upstream | 429128 | 23234623 ~ 23235029 (+) |
| G54166 | NA | non-coding | upstream | 472575 | 23169441 ~ 23191582 (+) |
| G54138 | NA | non-coding | upstream | 687475 | 22976461 ~ 22976682 (+) |
| G54264 | NA | non-coding | downstream | 225475 | 23890127 ~ 23894287 (+) |
| G54328 | NA | non-coding | downstream | 501138 | 24165790 ~ 24166061 (+) |
| G54356 | NA | non-coding | downstream | 613253 | 24277905 ~ 24278561 (+) |
| G54430 | NA | non-coding | downstream | 1118858 | 24783510 ~ 24787085 (+) |
| G54547 | NA | non-coding | downstream | 1507349 | 25172001 ~ 25172864 (+) |
| G53917 | NA | other | upstream | 2370256 | 21292241 ~ 21293901 (+) |
| G53915 | NA | other | upstream | 2388803 | 21274611 ~ 21275354 (+) |
| G53911 | NA | other | upstream | 2495582 | 21168231 ~ 21168575 (+) |
| AMCG00009033 | nlgn1,LOC103399994,LOC102210587,LOC102311540 | other | upstream | 3267801 | 20376795 ~ 20396356 (+) |
| AMCG00009022 | dnajc19,LOC107727073 | other | upstream | 4116650 | 19527897 ~ 19547507 (+) |
| G54263 | NA | other | downstream | 218665 | 23883317 ~ 23975906 (+) |
| AMCG00009085 | NA | other | downstream | 1147966 | 24812618 ~ 24816534 (+) |
| AMCG00009088 | LOC104966806,LOC108444346 | other | downstream | 1233464 | 24898116 ~ 24917863 (+) |
| AMCG00009104 | NA | other | downstream | 1825059 | 25489711 ~ 25493573 (+) |
| AMCG00009108 | NA | other | downstream | 1920230 | 25584882 ~ 25587615 (+) |
