G54264


Basic Information

Item Value
gene id G54264
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 23890127 ~ 23894287 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67815
CAGCTATATTATGGTGTGCTTTAGTCAGTCACTAGAGGTCCCCAAAACACTATTGTATGTTTTACTTAGTTCAGATACCAATTTAACATGGAGACCTCATTCAGGAATGTGATACAACATTATAGCCTTAAGATGCCTTTCTATTGCAGATCATTAAATGTTAGTTATTGTTCAGCCTGTCTTTAAAGAGTAAAGTCCAGCTATTAGGCTTGAGTAATGAGGCAGTTTGCATAACTTTATACAATGTCACAATTCAAGCCACATTTAAAGAGCAGTCTATAAATACTGTTATGGTAGTACtgggaaaaataatacatttatgtacaAAATTATACATGTAATCAAAACAATATGTGGACCTACCGTTCCAAAGAAAGAGACCACATTGACTCTATAGTTAAcaattttattacttttaacagTCTAATAAACTCCttaaaaaatAACAGCAAGagtacaatacattaattttcacAGTATAGGCTACTCCTTTCCATTGCTCACAAAGAGTGCTCTGCTTTGAAATTTCAAACTAATCCAGTTGAACTATCAATCAGACTTAATCTATGTTGTATACTGAATATTTAACTTTGGGGAAACCACTTCTTAAAAAGACTATTATAAAACAACTGGCATTGGTCTGAGGAGCACTAACTTACCAGAAAAgccttttgatttgatttttgtagCATCACAAAATCATTGGAATCAATTGACGGAGGTGATGAATGATTTGATAATGTGCGGATCCTGAAACTATGCTTCTTACTTAGGGTCATTGCACAACATTTCTTCTGCAGTCACACATATGGCAATAATTATCTGAGCATTTACACAAATTAAGGTCATTTGATCCTGCTTTTAAaacccaaaataataataaaaatataaaatcaagtgTTACTCTTCCCCACCACTAGGACCATAATAAAGTacacctgcctttaaaacaaggGTAATCTTCACAATGAAGTGTCAGTACGTATTAAGGACACAAACACTTGTCTtgaacatacaaacacacatgaaaataaaaacaaacaattaaagatAATGGCCTGGTGCTCATgcagaatacaaatgtatagtGTGTATCACGCTGACAACCAAGATTTGGTTTAGACAGCAGCTAAGGCACATGTTAATAACGGCCCTGTTACTCTCAGTTTATTTGCCCACAgtgcttcttaaaaaaaaaaaaaaaaaaaaaaaaagtttaaatatccCAAGTTGTTTGTTTCGTTTTCTTTTGGGCTCATTTGATATTGTTTGATTCATATCCCAGACCAATTCCCTTCTAACCAACACTCTCAATCCCTGGCTTTCTAATTGTGATAGGATTTAATTTCCAAATCCCTCCCACCATCTCCAACTCAAAACAGCTGAAAAATTAATTAAGACATTGCGATTCATTCCCTTGTTCAAAACTAATAGGTTGTTCTTTTGCCTGTTGTTATTTGACTCAAAACAGGGATTGCCTAATACTGCTAGCTTCGTTTCATTGATATGCCTAAACATTCAATCCACCCTGTTCTCTacaattcaatattcaatacCTGGAAGTCTGGACTCCACTGTTTACTGGTCTCTTATCTTTCAGGTCATTTTTCTCACCCAAACATAACTGCAATAAGTCCAACTCTCTGAATGCTCATATTTGGCGGACTTGTTTATggattagatttattttttcgtCATGAGGACATTCAGTAATACAATGTTGCAATGTGAGGTTCCCATGGGCCTACTTTATCTATATAAAATGGTAAGCTGGCTATCAGCACCAAATGTCAGCTTCAGGCCTACTATTTTGAACTGCAATAGTATACAGTTTACTGGTTGTTACATTACAACCATATATACAGAGACAGGAAGCACAACACTTAACAAAGCTTTAGGCCAAGCAACAATTGGAGATCGACTTTGGGGGGAAGTGAATAATTTGACTGGCGATCAACGTGAAGCAATCCaacaccataaaaaaaaaaaaaaaaaaagggaggtAGACAGAACTGAGCCatagattattattaagattatatTTCTGCCAATCCTAATGGTTTCAGATTATACACTTCTACAAGAAACAATTCATTAACTCGACTAATACTAGGCATGAGAAAAAGAACATAACTGTTGCAACAAGAGGATCTAGATATTTCTTCTCAGTTTAGCAATCTCTCCCCTGCCTTGTGCAATACATCCTCAGTTCTGCATTGTTCCCTTCAGCTAACCATCATCAGTCTTATTCAGCAATCACTTAACCATCTGTCATCTGATTTATTTCTGGGATGCTGACAAAACACCTTTCAAACTCTTGATTGTGGTTCCATACAGCTTCCATGCTAACTGCCAGTCAGATATCTGAGCCAGGCCATTTGTGGAATATCTGAATAAGGCAACGTTTTTCGAGATCTCCTAATCTACGAATATCCTCAAAACGCTTGCAGGGGAAAACAATATTCTGCTGTAAACAACACTGGGTGGTTACACATTCTGAAACAAACCAAAGCATGTTCGGCATACTCAGCCAGAATAGTCCGGGAAAGGGAAGACAAGAGCGACTAAGATTCTACTCATTCATCATTCGACAAAGACCGATTGTTGGATTCCTTGGATTTTTCTTCCGCCCACTCTGCCACAAAAGGTGATTTCTTAATCACTTGAACTCAGCATTTGCtacttgtgttatttttttcttcatcagtcaacaactttataaatatttatatatagatatataaatatttatatatatcaccTTATATAAAAAGCTTGCGCTCTCATACTGGAAGCTTCACTTAAATCActgaattcaaatgtaaaaaaattaaatattctctACCCTGATCCCTGCGGACACTATAATTGCAcacttctttttaaaaagaaatgagaAATTGAGAGCGCATACACATTTAACCCAAGTAAGCTGTTGGGGGTTAGAGAAAAAACAGAGCACTGCCTGCAAGCTCAGTAATACACCATTCACTTGCTCCACCAGCAACACATCACTGctactcttaaaaaaaaaaaaaatacatacatatatattctacataTCTGAAGTAACGGATGCAGATGTGTGGTAGGtacaaatgaaaaggaaatccAGACTGTGGTGCACACATAACCTGGACCTGCACTGCCTTACTATTCAAATCAAGAATAGACAAAGCCTGTAGTTTAAACCATCACTCATCTTTATAGATATTTAAAAGTTGCGCTGTCTCCACCATTTCAGTTGGCCTCTTGCAGGAACCAAGTAGATATTAATTTCGAGAGCAGAAGTTCAGAAATCAAGGTAGCACTGCTTCTGTACAGCAACCCATATAAGCAATTTgggcaaaaatgtgtttagttccccccccaaaaaaatcacGGTATGGAGCTTAATAtacctttacatttaattacaagcCTGTTTGTTTTAGACACTGCTTTACTTGTTTTACAATTGTAAGTATAATCCACAAAAAAGTCAGAAGTATTGTGTGCACACAGTAGCAGCCTTACTGCATCTTTATGTGAATTTAAATCCCACATTCCCATTAGTTGTttgaaacatgaaacattttgCTGTATGGATTTTTTTGCACAGATAATATAGCTTTGAAATACATCACAGGTTCACTTTCAGTTtgggaaggggggagggggtgtgtataaaacaaatcacattggCAAACGCaagctttaaaatgaatatatattaacaaaactaaagtatagctaaataaatgttgtagtcaatatacatacatacctatGACCTAAACAAGAGTCatgaattcaatacattttgaaagttaTCCAAGTCTTTTTTTGCGTCCACAGTCTTTTTATTGATATTCTGTCTTTCTCCCACCACTCACCCCACTTTTGAAATGGTTATTATTTCCACCAGCTGGTCAATAATCCAGGGTCCAGGGAAATCAAGACAAAGGTTTGACAAGGTAAAGTTTGTCTCCTTGTTCGCTTGTGAAAATGGGAGCTTTTTTGTAATGTTCCACCAACTCTTCCATGGAGCTGAATTTACGCTGTCCAATGCAGTATAGCTCATCTTTTAGCTGCACCTTGAAATGCTTGTTTTTGCCTTGGGCTTTCAGGGAAATTGAGAAATCATTTg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67815 True 4129 lncRNA 0.36 2 23890127 23894287

Neighbor

gene id symbol gene type direction distance location
AMCG00009061 NA coding upstream 4303 23872708 ~ 23885824 (+)
AMCG00009059 NA coding upstream 49145 23825222 ~ 23840982 (+)
AMCG00009058 NA coding upstream 65040 23816825 ~ 23825087 (+)
AMCG00009056 zic1 coding upstream 227914 23658201 ~ 23662213 (+)
AMCG00009053 LOC104937275,LOC102787465 coding upstream 1035633 22850991 ~ 22854494 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding downstream 135105 24029392 ~ 24049944 (+)
AMCG00009066 NA coding downstream 169555 24063842 ~ 24071730 (+)
AMCG00009069 NA coding downstream 306070 24200357 ~ 24206521 (+)
AMCG00009070 NA coding downstream 318129 24212416 ~ 24216847 (+)
AMCG00009072 ghsra,LOC107732507,LOC107680230,LOC107550603,LOC107586567,LOC107688542 coding downstream 324517 24218804 ~ 24221967 (+)
G54238 NA non-coding upstream 225475 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 226033 23663393 ~ 23664094 (+)
G54194 NA non-coding upstream 440650 23447154 ~ 23449477 (+)
G54174 NA non-coding upstream 655098 23234623 ~ 23235029 (+)
G54166 NA non-coding upstream 698545 23169441 ~ 23191582 (+)
G54328 NA non-coding downstream 271503 24165790 ~ 24166061 (+)
G54356 NA non-coding downstream 383618 24277905 ~ 24278561 (+)
G54430 NA non-coding downstream 889223 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 1277714 25172001 ~ 25172864 (+)
G54563 NA non-coding downstream 1413973 25308260 ~ 25308495 (+)
G53917 NA other upstream 2596226 21292241 ~ 21293901 (+)
G53915 NA other upstream 2614773 21274611 ~ 21275354 (+)
G53911 NA other upstream 2721552 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3493771 20376795 ~ 20396356 (+)
AMCG00009022 dnajc19,LOC107727073 other upstream 4342620 19527897 ~ 19547507 (+)
AMCG00009085 NA other downstream 918331 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 1003829 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1595424 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1690595 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 2899250 26793537 ~ 26796768 (+)

Expression


Co-expression Network