G54328


Basic Information

Item Value
gene id G54328
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24165790 ~ 24166061 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67901
TCAGAACCGAGTCCCGCTGTGGGCTTTCTGCTGCTGAGGAAAATCCATACGCGAAATTTGCCCTTTTGCACTGCTGTCACgattcaaccaaaaaaaaaacgctgGAAGGAGAAAGTTCTCCGTATTTTTTAAGAGCAACACGAACGGAGCACGTCTGCTAAAGCGAATGGTTTCCTTACTGTGTGTGAGTCCCACCGCTGACAGAGCATTGAGCTCTCATAGAGAATCTGAAGAGCACACGGGGGCCTGCGGGGGAGTTCCTGACAGCCAAA

Function

GO: NA

KEGG:

id description
ko00020 Citrate cycle (TCA cycle)

RNA

RNA id representative length rna type GC content exon number start site end site
TU67901 True 272 lncRNA 0.50 1 24165790 24166061

Neighbor

gene id symbol gene type direction distance location
AMCG00009066 NA coding upstream 94060 24063842 ~ 24071730 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding upstream 115846 24029392 ~ 24049944 (+)
AMCG00009061 NA coding upstream 279966 23872708 ~ 23885824 (+)
AMCG00009059 NA coding upstream 324808 23825222 ~ 23840982 (+)
AMCG00009058 NA coding upstream 340703 23816825 ~ 23825087 (+)
AMCG00009069 NA coding downstream 34296 24200357 ~ 24206521 (+)
AMCG00009070 NA coding downstream 46355 24212416 ~ 24216847 (+)
AMCG00009072 ghsra,LOC107732507,LOC107680230,LOC107550603,LOC107586567,LOC107688542 coding downstream 52743 24218804 ~ 24221967 (+)
AMCG00009079 NA coding downstream 295877 24461938 ~ 24498489 (+)
AMCG00009076 tnik,LOC103024681,LOC107721871,LOC107663657 coding downstream 400378 24566439 ~ 24631632 (+)
G54264 NA non-coding upstream 271503 23890127 ~ 23894287 (+)
G54238 NA non-coding upstream 501138 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 501696 23663393 ~ 23664094 (+)
G54194 NA non-coding upstream 716313 23447154 ~ 23449477 (+)
G54174 NA non-coding upstream 930761 23234623 ~ 23235029 (+)
G54356 NA non-coding downstream 111844 24277905 ~ 24278561 (+)
G54430 NA non-coding downstream 617449 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 1005940 25172001 ~ 25172864 (+)
G54563 NA non-coding downstream 1142199 25308260 ~ 25308495 (+)
G54566 NA non-coding downstream 1181217 25347278 ~ 25348983 (+)
G54263 NA other upstream 189884 23883317 ~ 23975906 (+)
G53917 NA other upstream 2871889 21292241 ~ 21293901 (+)
G53915 NA other upstream 2890436 21274611 ~ 21275354 (+)
G53911 NA other upstream 2997215 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3769434 20376795 ~ 20396356 (+)
AMCG00009085 NA other downstream 646557 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 732055 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1323650 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1418821 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 2627476 26793537 ~ 26796768 (+)

Expression


Co-expression Network