G54356


Basic Information

Item Value
gene id G54356
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24277905 ~ 24278561 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU67939
caaagaaatgatcagtctataattttaatggtaggtgtattttaacagtgagagacagaataacaacaaaaaaatccagaaaaacacatttcaaaaaagttatacattgatttgcatgttaatgagggaaataagtatttgaccccttcgacttagtacttggtggcaaaacccttgttggcaatcacagaggtcagacgctaggccactccaggaccttaatgtgcttcttcttgagccactcctttgttgccttggctgtgtgttttgggtcattgtcatgctggaatatccatccacgacccattttcaatgccctggctgagggaaggaggttctcacccaagatttgacggtacatggccccgtccatcgtccctttgatgcggtgcagttgtcctgtctccttaatgtttccacctccatgtttgacggtggggatggtgttctccaaacacgagttgagttgatgccaaagagcttgattttgg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU67939 True 491 lncRNA 0.44 2 24277905 24278561

Neighbor

gene id symbol gene type direction distance location
AMCG00009072 ghsra,LOC107732507,LOC107680230,LOC107550603,LOC107586567,LOC107688542 coding upstream 55938 24218804 ~ 24221967 (+)
AMCG00009070 NA coding upstream 61058 24212416 ~ 24216847 (+)
AMCG00009069 NA coding upstream 71384 24200357 ~ 24206521 (+)
AMCG00009066 NA coding upstream 206175 24063842 ~ 24071730 (+)
AMCG00009064 stag1a,stag1,LOC107722576,LOC107688487,LOC107709887,LOC107586054,LOC106575446 coding upstream 227961 24029392 ~ 24049944 (+)
AMCG00009079 NA coding downstream 183377 24461938 ~ 24498489 (+)
AMCG00009076 tnik,LOC103024681,LOC107721871,LOC107663657 coding downstream 287878 24566439 ~ 24631632 (+)
AMCG00009078 NA coding downstream 355829 24634390 ~ 24647480 (+)
AMCG00009077 eif5a,LOC107590245,LOC107685442,LOC107586748 coding downstream 371153 24649714 ~ 24654285 (+)
AMCG00009080 rpl22l1,rl22l,LOC107721850 coding downstream 385742 24664303 ~ 24666228 (+)
G54328 NA non-coding upstream 111844 24165790 ~ 24166061 (+)
G54264 NA non-coding upstream 383618 23890127 ~ 23894287 (+)
G54238 NA non-coding upstream 613253 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 613811 23663393 ~ 23664094 (+)
G54194 NA non-coding upstream 828428 23447154 ~ 23449477 (+)
G54430 NA non-coding downstream 504949 24783510 ~ 24787085 (+)
G54547 NA non-coding downstream 893440 25172001 ~ 25172864 (+)
G54563 NA non-coding downstream 1029699 25308260 ~ 25308495 (+)
G54566 NA non-coding downstream 1068717 25347278 ~ 25348983 (+)
G54580 NA non-coding downstream 1126109 25404670 ~ 25413822 (+)
G54263 NA other upstream 301999 23883317 ~ 23975906 (+)
G53917 NA other upstream 2984004 21292241 ~ 21293901 (+)
G53915 NA other upstream 3002551 21274611 ~ 21275354 (+)
G53911 NA other upstream 3109330 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 3881549 20376795 ~ 20396356 (+)
AMCG00009085 NA other downstream 534057 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 619555 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 1211150 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 1306321 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 2514976 26793537 ~ 26796768 (+)

Expression


Co-expression Network