G54430


Basic Information

Item Value
gene id G54430
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 24783510 ~ 24787085 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68038
ggaAAAGCTGTAGATccaagcaagtggaaacatcttgatataagctgctgatgatgatgttgatatatatagcataacatatatatatatgttatttacacattatttgCACCAATATTCTCTTATTTGGCACAATATGTAAACAAAGTATAGAGGATGGAATAGAGGTTTTAAAGTTAAACACCCATTAGATTCACAAAATTAATGCAAAGAGcagtttagagaaaaaaaaaacttttattaaTAGAAATTCAGACAATAAAAGATACCAATGCTGTAATAAATAATCAAGGCAGTGTTTCATGTGTTATTATTAGAAAAGTCTCGTGGAATGTTATAAAGATTAGTTTGTTCTTTTAATGGAAATAGCTCTGTAAGTATGTGGGATTTGCAGTGGTAAATTAGTCTACTATTCTTGTGTCATGTATTGCTACCCATCacattgtgttgctttaaaCACTGTACATGCCTAGACTATTTATACATTACCGTAAATGATCAATCAGTTTTTATGTACAGGAACCACCATTTTCTGCAGACGATCAGAAATTAAAGTTTCATGTCTTGGTACCTTTGATACCTTTTTGAGGTTTACAGGAATTCACATTATACTGCAACACATTAATGACCATTGACAATtacaacaaagacaaaacataatAAGCTATTTAGTATTATGAACCTTTGTCTTTATGGAAGAAGTTCTAAAGCACATTTCTTAGGAAGAGTCCTTGGATTATTGAATCCCTTTATCACTTCATACAACAGATGTGCCTGCTTTTAATGACCTGTACGTTGGGGTTTGTGCTTGCAAAACATCTGGATGAATCTTCTGTCACTCAGAGACCTGGCAGCTGGCCTGTTGCATTCCATCGATCTTTGAAGGGGAAAACATCAAATGACTTACTGCACAGGTtatatgtaaaacaatgaaatccATTATTCCACAGTGGGATGCCCTCATAATTGAAGCTGGAGTGAAACTGCCCGGTGGAAGGTCCTCTTTTGGTTGTGTTAGTCCGATTGTTGTAATCCAGTCTCACACGTGAGCACTTTTGGCATGGTTGGCAGAAGGGGCGGGGTTGGTTGATCCCTGTTTAGAGTAATAGAAGCGGTTCTCGGTGTACTGTGTGGAATCGCCCGAACAACAGCTGATCATTGATCCGCCGAGAAGACAGAAGGCCGAGCCCACCCAGCCCACGTACAGAGAGAAGCCAAAAGACATCAGCCCTGTCTCATGCAGCACTAGAGGAATGAACACCAGAAGCACTCTGGCCTTTGTGGACCGGACTTGAAGAATGCAGCTGTGAATGGTACCACGACCCTGAACTGGATGAAGTAGCCATGCCATACTTGCAGGTGAAAACCCACTCGTTGGTGGCTGTAGCAACGATGATCCCGATCCAGCCAAAGCAACTCATCATAAAGCCACAGAGCTGCAGGCAGGAGTTGGCCATGGCACAGCAAGAGGTACGacaagcaaaacagaaaaaagaccGAAATATGGAACAATAATAGGACTGATGATAACTGGCAAATACCAAATGTATACACAATatgctacaaaataaataatccagaACTTCTAGACGATCTTTGGAGTGCTGTGTAGAAATAATCCCATCATGTGCAAACCATTGAAGTCCATGTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68038 True 1653 lncRNA 0.39 3 24783510 24787085

Neighbor

gene id symbol gene type direction distance location
AMCG00009081 LOC108442332,LOC107680258,LOC107732514,LOC107550597,LOC107688500,LOC107584921,LOC107722625 coding upstream 2759 24762016 ~ 24780751 (+)
AMCG00009080 rpl22l1,rl22l,LOC107721850 coding upstream 117282 24664303 ~ 24666228 (+)
AMCG00009077 eif5a,LOC107590245,LOC107685442,LOC107586748 coding upstream 129225 24649714 ~ 24654285 (+)
AMCG00009078 NA coding upstream 136030 24634390 ~ 24647480 (+)
AMCG00009076 tnik,LOC103024681,LOC107721871,LOC107663657 coding upstream 151878 24566439 ~ 24631632 (+)
AMCG00009084 prkci,LOC106600503 coding downstream 31133 24818218 ~ 24844217 (+)
AMCG00009087 NA coding downstream 70928 24858013 ~ 24859230 (+)
AMCG00009083 NA coding downstream 86488 24873573 ~ 24881942 (+)
AMCG00009089 NA coding downstream 163690 24950775 ~ 24958636 (+)
AMCG00009097 NA coding downstream 245017 25032102 ~ 25037678 (+)
G54356 NA non-coding upstream 504949 24277905 ~ 24278561 (+)
G54328 NA non-coding upstream 617449 24165790 ~ 24166061 (+)
G54264 NA non-coding upstream 889223 23890127 ~ 23894287 (+)
G54238 NA non-coding upstream 1118858 23664157 ~ 23664652 (+)
G54237 NA non-coding upstream 1119416 23663393 ~ 23664094 (+)
G54547 NA non-coding downstream 384916 25172001 ~ 25172864 (+)
G54563 NA non-coding downstream 521175 25308260 ~ 25308495 (+)
G54566 NA non-coding downstream 560193 25347278 ~ 25348983 (+)
G54580 NA non-coding downstream 617585 25404670 ~ 25413822 (+)
G54608 NA non-coding downstream 729288 25516373 ~ 25517909 (+)
G54263 NA other upstream 807604 23883317 ~ 23975906 (+)
G53917 NA other upstream 3489609 21292241 ~ 21293901 (+)
G53915 NA other upstream 3508156 21274611 ~ 21275354 (+)
G53911 NA other upstream 3614935 21168231 ~ 21168575 (+)
AMCG00009033 nlgn1,LOC103399994,LOC102210587,LOC102311540 other upstream 4387154 20376795 ~ 20396356 (+)
AMCG00009085 NA other downstream 25533 24812618 ~ 24816534 (+)
AMCG00009088 LOC104966806,LOC108444346 other downstream 111031 24898116 ~ 24917863 (+)
AMCG00009104 NA other downstream 702626 25489711 ~ 25493573 (+)
AMCG00009108 NA other downstream 797797 25584882 ~ 25587615 (+)
AMCG00009129 NA other downstream 2006452 26793537 ~ 26796768 (+)

Expression


Co-expression Network