G54544


Basic Information

Item Value
gene id G54544
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25153266 ~ 25156338 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68185
TGCCAGTGACACATGCAGTGTTATTTTAGGTCTATTTTGTAGCTGCTACAGAACAGACACAAGTACTCCTTATTTGATCCagaatatttaacaaaatgttattttgtcaaGCAGTGGTCAATCATTAGCACATAATGTGGACCTGTCATTTGTCTTTCCTCATAGGCCAACAAGTGACTATTACGTACTGTGAGGCATACATTTAGTGCTTCATAATAGGGCCTTGTTCCAATGTTTCATATTCACCGCACACTTGGATACAGGTCATTAAGTCACATTATTTGCATACTTGCCACCCTGGATCCATAATATCAACAGGTATATTGCACTTCATGTTTTTAGTCTAATATTATTTGATATCAGCTTTTAATCTCTGAAACCAGTTTAATTTCTTGTAATGCCCAGGCCTGTGATCATCTAGTAGCCACACTTGGCAAATGAGGTAGCAGAATTAAACAAGGTTGTGGATATATGTGAATATAATGATGTGtggtacagaaatatatataattgacatATACATAATTTGTACAAAGGCCAATTGCCTGCTTTTGATGGTAAATAAACACAGGAATTCATGTTATTATAAACCATTCACATATCCAGCAGTTTATCACTCCATTATCACTTTATTCCTGATTTACAGACACCTCAAGAAACCTGGATTGTATGAGGTTTCCAAATGTTATCGGATCATGatggtaaatatattttcatttgacaTTCTATTTCATATGAGCCTACTGCAAAAAGTACCACGGTACTCGGCTCACTGGGTTACATTGACTGTTTAAGCATAATACGAAATGTCTTTCACTGAATTACCAATAAACCTCTCCCTACCCACAAGATGATCAGTTTAAACCTCTCATTGCCAAGGGTTACTGCTATGATAGAATATGTTCATGTCAATTAAGTTAATTGTTgagataattaaatatgcagtttgtttacttgtccattacacattttttttctatatttaaaccCATTAGGACCCAGatgataccaaaataaatataatttaataatcaccagaattattatatattttatgaatgcaGTATAAaagaataaactaaaaatagaatgccaaaccaaacaaaaacaagcaaacacaaactaaacagGTTCTTCAAAGACCCAGGGTAGGGACAAACAATTCTAAAACATCCCCTATCTTTATGACTCTCATTATCAGCTATCGTCCAAAGCTATTTTATATAAGGTTAAGTCCCCTTAACATTTGACATGAAAGGcaggatttaattaattattaattaatgccCCAGTCTTTGCTGAATGTCTAGCGGTCACCGTTCACTGGTTTGATGTCAGGGTACAGGAGGAAGCCAGAGAAGGTGGAGTCATTGATGTTGTCGGCATAGATCCCGCTGTAGTCTTCCTCGCCATAGACCTGAAGCCAGACTTCATCCCCTGAATCCAGGTGCTGGATGATGGAGCCTGAGGCCTGGTCCACATTGTTCTCCTGGAACTGGTCGAAAGTAAACATGATGGATTTGTCATTCTTGTAGAGGCTAACCTTGACGTCCTTCATGTACACGGTGAGGTGGTAGGTGAAGAAGTAGATGCCAGGTATGGTGCAGCGGAACTTGCCCGTGCTGTCATCATAGTGCCGCTGGTCATTGTAGAAGACCTTGTTGAACTTGATGGGTACATTGGGCATGGGTGTGCGGTCGGTCAACCCGATACTGAAGGCCGAGCGGTACAGGAAAGCACTCTCCCCCCGCTCACCCTTTAATCCTGGGGTGCCTGGGAAGCCACGGGGCCCCTCTGGACCCTCAGCCCCGTGCTCCCCTGGATCTCCCTTCTCTCCAGGTTCacCtggctctcctctctctcccttttctccaTCTCTGCCATCTCGTCCATCCCTGCCTGGTTGACCGTTGTGTCCAGGTGTACCTGGTACTCCTCCCATCCAACCAGCACAGGGCTTCCTGTCATCTGCCACCTCGTTATGTGTCTCTGAATCTGGTCCACTTGGTTCTTCTAGAGcagtttcttcttcttgtgAGAGGCACAGATTGATGACTCCCACCAAGAGGCAGGACAGCAGTGCCCAAGCCAGCTTCATGGTGACTGGAATCAATCCTCAGCCAACTGCAGGGGGTGTAGAAAAAGTCAGTGTTGTGAACCTTTGTCACTTTATCATTAAGCT

Function

GO:

id name namespace
GO:0061061 muscle structure development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68185 True 2182 TUCP 0.42 2 25153266 25156338

Neighbor

gene id symbol gene type direction distance location
AMCG00009099 NA coding downstream 9836 25116385 ~ 25143430 (-)
AMCG00009094 NA coding downstream 178610 24967917 ~ 24974656 (-)
AMCG00009095 NA coding downstream 185683 24963090 ~ 24967583 (-)
AMCG00009092 NA coding downstream 191339 24960593 ~ 24961927 (-)
AMCG00009091 NA coding downstream 210992 24934221 ~ 24942274 (-)
AMCG00009098 NA coding upstream 6247 25162585 ~ 25169182 (-)
AMCG00009102 NA coding upstream 138623 25294961 ~ 25301473 (-)
AMCG00009103 NA coding upstream 194181 25350519 ~ 25368414 (-)
AMCG00009101 NA coding upstream 248330 25404668 ~ 25422813 (-)
AMCG00009112 uggt1,LOC107748935,LOC107683622,LOC107727334 coding upstream 731073 25887411 ~ 25931495 (-)
G54466 NA non-coding downstream 268541 24882039 ~ 24884725 (-)
G54450 NA non-coding downstream 305437 24813553 ~ 24847829 (-)
G54447 NA non-coding downstream 362003 24788395 ~ 24791263 (-)
G54408 NA non-coding downstream 442493 24627839 ~ 24710773 (-)
G54415 NA non-coding downstream 487032 24664305 ~ 24666234 (-)
G54548 NA non-coding upstream 13893 25170231 ~ 25172840 (-)
G54561 NA non-coding upstream 127339 25283677 ~ 25284103 (-)
G54578 NA non-coding upstream 190874 25347212 ~ 25349010 (-)
G54594 NA non-coding upstream 322350 25478688 ~ 25478901 (-)
G54597 NA non-coding upstream 329732 25486070 ~ 25486488 (-)
AMCG00009060 hltf other downstream 1290231 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 2969701 22183088 ~ 22183565 (-)
G53809 NA other downstream 4881452 20179799 ~ 20271814 (-)
AMCG00009027 NA other downstream 5091087 20061524 ~ 20062179 (-)
AMCG00009029 NA other downstream 5182990 19961027 ~ 19970276 (-)
AMCG00009100 NA other upstream 17339 25173677 ~ 25176378 (-)
AMCG00009106 NA other upstream 304268 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 373491 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 1366295 26522633 ~ 26532410 (-)
G54821 NA other upstream 1637203 26793541 ~ 26796654 (-)

Expression


Co-expression Network