G54578


Basic Information

Item Value
gene id G54578
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25347212 ~ 25349010 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68225
aatttttttatgcATGTGTATAATGTATCCTCCATTGCTTGGATTGCAGCTTTTGATTATGTTTAACTCTGTTGAAATGACCGTGCTAACTCAGGTTTTGTTGAATCCATGAAAGCTTCCTTTTCTAGACCAGTGATGTTGCATTCCAGTCAGTTCAGTCTAATTTATACTAGTGTAACACCGCAGACCATAGCTCTCTAGGAATGAGTTTGAAGAAGTTTGTTTCAGCTTGTATTACAAACACAGGTCATGGTCttccttttgaaaaatgtatgttaagGTTAAAATTGGGTTGCACTGTAAGGTCGTCTGGATCTGCCACCACTTTTCTGCTACATTTAGATtgctttataaatgtgttgcacAGTCTACATCAGAGCAGTGCTATTGTGGAGTGTTTGGCAATAGGTGGAGTATATGgtggagtttatttttatatacctATAGTAGTTTGTACACtgaatttatttgtacatttccaGCAACACAGAGTTATTTTTTCTCTATGCATAGATATTGGTCTGGAGTTCATAGCTCCAAGTGAGCCCTAGTGATGGACTGGCAGAATATAACTTTGTTTTCACAGATCAAGTTGGGGATGCACAGGTAACTGACTAAAATAAACTGTCAGGTTGACGTTGCTGTTCAAGATTTCTTCAGAAAGTGATCCgtttattaaaataaccacATCTTTATCAACAGCTATTCCACCATGCTTTTTTAAAGGCACTGATCTGAGTTTATTGCTATAAACATGTCACCTTTTGATTGGATCACAGTTCAGGGTGATCAACATTAGTGGTGCACAAATCCAGCAGGTTTCTTTGAATCACCAGCAAGTTCAGAGCTGGTCGTTAAATCCGTTCAAATCCCTGATTTAACCTCCTCCATGTCCAAACCCATAAATATTTTGGAAGCAATGTATTGAatgacatttttcatatttctggTTCTCACAAGTGAGAAGGGATGATCATAAATGTGAGCATTctctttttgaatatattacaCTCGTATATCCATGAAATACGTTGTTCTGTTCTTTACAGAATTTATACAGAAAATGCATCCAACACAGTGAGGTTCATATTTGTCAGTAAAACAAAAGGGTTACCTTGACCTCCTGTAGTTAATTAGTGAAGAAAAAACCTTTCACAGTTGACCTTGGTTTACTTCTTTTCCCCCTCAGTGGTTTCTTGTGACAGCCCTGGATCATAGCTTGTACGATTAACCTATGCTCTGTGTAGAATGTATTCATCACATGGCATTCGGTTTTATTGTAAAAGGGAATATCTAACACAGAACAGAAATTTGTAGTTTACATGTATGAATGGGAAAGTTCCTTTCTAGAAGTGATAATTTGTTGTCCATCCCAGAACATAGTGCACTGCAGTTATCCAGAGTACAATGAAAGGAATCGCCGTGCTGCACAATTTAGCAAAACATTTAAGCCCGCTATCTGTTTGCTTGCAGCCTAGTTGTGTAATGTCTGAGATGTGTGTAATCCACATGTTCTTGAAAAAACGTTAAACTTGATTTGCACAaagctgttatttttgttttgtttttttgatggCAAGGTACATGTTTAACCTATGAGAAATGCCATCAATGtgaataataatgcatttgaaatttCTGGAAGACCAAGTAATCttgttaaatatgtgtatatggTTTCctgtacagaatatattttacaactgtattgtttgtataggtgattgtaaatgcattaaagttattatgattattattacatagaGGCTTTTTACATCACAGTATATAATGATGTGATT

Function

GO:

id name namespace
GO:0006814 sodium ion transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68225 True 1799 lncRNA 0.36 1 25347212 25349010

Neighbor

gene id symbol gene type direction distance location
AMCG00009102 NA coding downstream 45739 25294961 ~ 25301473 (-)
AMCG00009098 NA coding downstream 178030 25162585 ~ 25169182 (-)
AMCG00009099 NA coding downstream 203782 25116385 ~ 25143430 (-)
AMCG00009094 NA coding downstream 372556 24967917 ~ 24974656 (-)
AMCG00009095 NA coding downstream 379629 24963090 ~ 24967583 (-)
AMCG00009103 NA coding upstream 1509 25350519 ~ 25368414 (-)
AMCG00009101 NA coding upstream 55658 25404668 ~ 25422813 (-)
AMCG00009112 uggt1,LOC107748935,LOC107683622,LOC107727334 coding upstream 538401 25887411 ~ 25931495 (-)
AMCG00009113 hs6st1a,LOC107678693,LOC107727332 coding upstream 593115 25942125 ~ 25950002 (-)
AMCG00009114 hs6st1,hs6st1a,LOC107602601,LOC107588870,LOC107727332,LOC107748934,LOC107678693 coding upstream 710531 26059541 ~ 26060656 (-)
G54561 NA non-coding downstream 63109 25283677 ~ 25284103 (-)
G54548 NA non-coding downstream 174372 25170231 ~ 25172840 (-)
G54466 NA non-coding downstream 462487 24882039 ~ 24884725 (-)
G54450 NA non-coding downstream 499383 24813553 ~ 24847829 (-)
G54447 NA non-coding downstream 555949 24788395 ~ 24791263 (-)
G54594 NA non-coding upstream 129678 25478688 ~ 25478901 (-)
G54597 NA non-coding upstream 137060 25486070 ~ 25486488 (-)
G54598 NA non-coding upstream 137967 25486977 ~ 25488628 (-)
G54610 NA non-coding upstream 163823 25512833 ~ 25515018 (-)
G54613 NA non-coding upstream 173111 25522121 ~ 25524025 (-)
AMCG00009100 NA other downstream 170834 25173677 ~ 25176378 (-)
G54544 NA other downstream 190874 25153266 ~ 25156338 (-)
AMCG00009060 hltf other downstream 1484177 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 3163647 22183088 ~ 22183565 (-)
G53809 NA other downstream 5075398 20179799 ~ 20271814 (-)
AMCG00009106 NA other upstream 111596 25460606 ~ 25462690 (-)
AMCG00009105 NA other upstream 180819 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 1173623 26522633 ~ 26532410 (-)
G54821 NA other upstream 1444531 26793541 ~ 26796654 (-)
AMCG00009148 NA other upstream 1761986 27110996 ~ 27153475 (-)

Expression


Co-expression Network