G54598


Basic Information

Item Value
gene id G54598
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 25486977 ~ 25488628 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68252
ttcttttacatttttttattcaatttttcaatGCTGTAAAATACCATTGAGAATAAGGTTACAAAGGCAATGACATCAGGCaaatttaaagattaatttattaGCAACACGTGTTTATAAATTCATGCTGTGTAACAATAGCTCAGATTGTTGCAATTCAACTTCCACTGCAGAGAAGGGAAATCGCTATAATTGTTGACCTCATTTATGAAATACATCTTGCAAGTTTTAAACGCCATCATTCACCGAAtgtcatttacaaataaaacagaaaactgtcAGATTAACACATTAACAGTGTGTCTCAAgagtattgtattttaatatttattcatcCTCACCAATACAATCTTTGAAAAGAATAATGTACTTTACCTATTTAGATTAATTGCATGTGCAAACTGACAGTATATGAGTGAAGAGTCCAAATAATGTATGTCCAAATAATAATGTCccagtaatgtaatgtatgtagagagatgtattttcaatcaaGAGGAATTTATTACGAGCGGCCGCATGGAAGAGGTTTTcgagaggcaatctcaagaacagtcttagagaagttacaaagtacaggcatttttatgcagaccagacaggaaagaaagataacaggctcacatgtctgtcccatgatgagtgcaagttcggtttctgcctgacaaatGGTCAGGGAGACCCATATATGACTAAACCGTTGAAAATTAAGGCATACgcaatgtttaatataagggggtcTTGTacatgtatcaagcccaaatccctggttcttatcagaccctgttcttatAGGTatctatagcacagtaccgtgAGACTAAGTCTGtcagacagtgaccttgtttacacaatcacacaaggaaagaaatgcagttctgcAATGAGTATCTTATTGTATAGAGTAAAGGTTTATATTAGGGaatatgtttctgtttattattattttgtattgtctcTTCCCTTAACACCTGTGAATCTCTGAAGAATAAGTATTGCACCTTACAAAGGTTTACCTCTTTTAAGCTTAATTAAGCAAAAGCATTGAAAAATGCATACACTTTTGCAGACTGCTATAAACTATTATGTGCTATGTAATGTATGTGGTGCAGTCATAGTGAAATAAAAGCCTTCCACTAGTAACTTTAAATCTCAAGTTTTGCTGGTTTGACATTAAACATCTGTGGAAGAAGAGTGTCGTCTTGTTCTTTTCCCAGACTTTCTGTCCTTCCTTTTTTCAGGTGTTTAACGatttctttcac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68252 True 1262 lncRNA 0.35 2 25486977 25488628

Neighbor

gene id symbol gene type direction distance location
AMCG00009101 NA coding downstream 64164 25404668 ~ 25422813 (-)
AMCG00009103 NA coding downstream 118563 25350519 ~ 25368414 (-)
AMCG00009102 NA coding downstream 185504 25294961 ~ 25301473 (-)
AMCG00009098 NA coding downstream 317795 25162585 ~ 25169182 (-)
AMCG00009099 NA coding downstream 343547 25116385 ~ 25143430 (-)
AMCG00009112 uggt1,LOC107748935,LOC107683622,LOC107727334 coding upstream 398783 25887411 ~ 25931495 (-)
AMCG00009113 hs6st1a,LOC107678693,LOC107727332 coding upstream 453497 25942125 ~ 25950002 (-)
AMCG00009114 hs6st1,hs6st1a,LOC107602601,LOC107588870,LOC107727332,LOC107748934,LOC107678693 coding upstream 570913 26059541 ~ 26060656 (-)
AMCG00009118 NA coding upstream 986051 26474679 ~ 26483701 (-)
AMCG00009120 NA coding upstream 1002249 26490877 ~ 26494273 (-)
G54597 NA non-coding downstream 489 25486070 ~ 25486488 (-)
G54594 NA non-coding downstream 8076 25478688 ~ 25478901 (-)
G54578 NA non-coding downstream 137967 25347212 ~ 25349010 (-)
G54561 NA non-coding downstream 202874 25283677 ~ 25284103 (-)
G54548 NA non-coding downstream 314137 25170231 ~ 25172840 (-)
G54610 NA non-coding upstream 24205 25512833 ~ 25515018 (-)
G54613 NA non-coding upstream 33493 25522121 ~ 25524025 (-)
G54682 NA non-coding upstream 601751 26090379 ~ 26090785 (-)
G54697 NA non-coding upstream 761918 26250546 ~ 26250857 (-)
G54706 NA non-coding upstream 918955 26407583 ~ 26407864 (-)
AMCG00009106 NA other downstream 24287 25460606 ~ 25462690 (-)
AMCG00009100 NA other downstream 310599 25173677 ~ 25176378 (-)
G54544 NA other downstream 330639 25153266 ~ 25156338 (-)
AMCG00009060 hltf other downstream 1623942 23825229 ~ 23863035 (-)
G54003 LOC107575789 other downstream 3303412 22183088 ~ 22183565 (-)
AMCG00009105 NA other upstream 41201 25529829 ~ 25531566 (-)
AMCG00009121 NA other upstream 1034005 26522633 ~ 26532410 (-)
G54821 NA other upstream 1304913 26793541 ~ 26796654 (-)
AMCG00009148 NA other upstream 1622368 27110996 ~ 27153475 (-)
AMCG00009151 NA other upstream 1825689 27314317 ~ 27335731 (-)

Expression


Co-expression Network