G54821


Basic Information

Item Value
gene id G54821
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26793541 ~ 26796654 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68523
GTTTTCTGCTCCCATCTCTGCATAGCAGTTCATAGTCAGCTTGTTCTGCCActaacaacacaaaatacaaaatacatcatgACTTTTGCAAAGCCAACAAAGTGACAAGCAAAAACTGTGAAGAGTATTCTCAGATactacttttttcccttaattATTCTATACAGAAACCAGAACATTCGAAGGTCACCTGGTACTCTGAGGTGGTCCACAAAGGCGACATCtccttttctgtctttcagaCACTGGAAAGCACCAGAATAATCGTAGTAGGGTTCCTTATGGGAGCGGCTGCAGTCTCCCTGGCATTGGCTGCACAGTTCCGGGGTTTTTGCTCCAGGGACACAACTTCCAGAAAAGAACCTGGCCACAGCTTTCTCCAGGGGCTCATTCTCAATTCCTTCCCATTGAATAAAACCTTCAGACACCAGGGTGCCAATGGGAATGTTCCACCCAGCGGACTTGCCCAGGCCTGTGTGGCAGGACTTCTTGCCTGCCAGTTGCTTGAAAGTGAAACCACTGCCTTTCTTCACCAACGCAACGGCGTAGTAACAAGTGTCTGATTCGACACCGTAGTCCTCCGCTATGATTGGGTGGAGATCGTAGTTTTTAAGACCAGCTTCATATATATCACCACCATCCAGAGTGATTGAATCAGCGTCTCCATTcTTTATTGCCTCTAAGCAGCTTTTGACCGAATCCCTCTTTACACAGAGAAGGGCAGGGACCACTTTATTCACATCATCACATTTCTTCTTCTCGATGTCAG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process
GO:0004806 triglyceride lipase activity molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

RNA

RNA id representative length rna type GC content exon number start site end site
TU68523 True 769 TUCP 0.46 5 26793541 26796654

Neighbor

gene id symbol gene type direction distance location
AMCG00009137 NA coding downstream 3910 26788878 ~ 26789631 (-)
AMCG00009131 NA coding downstream 5076 26787018 ~ 26788465 (-)
AMCG00009127 NA coding downstream 16074 26774549 ~ 26777467 (-)
AMCG00009126 arhgef4,LOC108432112,LOC107700563 coding downstream 120302 26655165 ~ 26673239 (-)
AMCG00009125 fbxo45,LOC106590630,LOC106578473 coding downstream 158177 26630612 ~ 26635364 (-)
AMCG00009136 NA coding upstream 14241 26810895 ~ 26814469 (-)
AMCG00009132 NA coding upstream 26872 26823526 ~ 26827014 (-)
AMCG00009134 NA coding upstream 38874 26835528 ~ 26839792 (-)
AMCG00009135 NA coding upstream 55825 26852479 ~ 26860729 (-)
AMCG00009133 NA coding upstream 64604 26861258 ~ 26866165 (-)
G54797 NA non-coding downstream 114953 26678250 ~ 26678588 (-)
G54792 NA non-coding downstream 143548 26626806 ~ 26649993 (-)
G54706 NA non-coding downstream 385677 26407583 ~ 26407864 (-)
G54697 NA non-coding downstream 542684 26250546 ~ 26250857 (-)
G54682 NA non-coding downstream 702756 26090379 ~ 26090785 (-)
G54841 NA non-coding upstream 52559 26849213 ~ 26852408 (-)
G54886 psmd2,LOC107579021 non-coding upstream 181453 26978107 ~ 26979245 (-)
G54911 NA non-coding upstream 229885 27026539 ~ 27033024 (-)
G54914 NA non-coding upstream 236498 27033152 ~ 27034216 (-)
G54978 NA non-coding upstream 624164 27420818 ~ 27422678 (-)
AMCG00009121 NA other downstream 261131 26522633 ~ 26532410 (-)
AMCG00009105 NA other downstream 1261975 25529829 ~ 25531566 (-)
AMCG00009106 NA other downstream 1330851 25460606 ~ 25462690 (-)
AMCG00009100 NA other downstream 1617163 25173677 ~ 25176378 (-)
G54544 NA other downstream 1637203 25153266 ~ 25156338 (-)
AMCG00009148 NA other upstream 314342 27110996 ~ 27153475 (-)
AMCG00009151 NA other upstream 517663 27314317 ~ 27335731 (-)
AMCG00009165 rpl35a,LOC106612432 other upstream 816944 27613598 ~ 27618172 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other upstream 1588429 28385083 ~ 28390096 (-)
AMCG00009215 gpr17 other upstream 2261287 29057941 ~ 29063030 (-)

Expression


Co-expression Network