G54841


Basic Information

Item Value
gene id G54841
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 26849213 ~ 26852408 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68544
tatatacatatatatgatgattaattttaattacattccAATTGTTTATTGATATCTACCATACAGATTATTTGacccagactttttttttattatgactgaattaaaattaaatgtgggCTCAAACCAGAGACAAACCAGAAATGATGCTTATTTTgaaggtttgtgtgttttcttgaaATGCAGTCGTAAGTCTGCTGTTTAATGACACGCCTGTAATTGTAAAGATGGAGCGTTGGGGGGTGTTTTGATTGCCGATTCTCATTGCAGTCTGCACTGTTGCCTTCGCCAGCTTCAGTTCTAGAGtgggtggttttgtttttttagaacaCTTGTGAACTTGATAGTGGCTCCCCAGTCTTTCTGTAAGACTGAATTATGTTGTCCATGAAGAGaaacttattaaaaaataaatgatgtctAATGGGAACACCAAAACATAtttgacataaaaaaatgaattatttttaaatacagactaTTCCCCAATACTCTTGATATTTTGGTTATTTACACAGTAGCCCATGTGATCTTTCCCCTGGTAGTGTGTGAAGCTTGGAGAAGAAATCTTACAGGTTAGCTGATTTTATTTCAATCTGCTTGGCCAGattaagcattttgttttgcctcGCTGTTCCTTTACATCAGCTAGTCTGTGATTCCCACTCACAAGTCTTACTTGATCGCTTCAGGAAGGAGTGTGTCTGTAACAAGGATTTGTATTCATAAATTTTTGCCTAAAGCAACAATTAGTACTCCGACAGTTTGTTTCTTGAGCGCTGAATATTTTGCCTATCAACTCCACTATTCCACAATACATGgcttctgtatatatatatatatttaacttccATGAAATACAATCGTTTTTAACCCTTCATAAAAGAAATGAATGATTTGAACTCGTAACtcaattaatttcagaaaagcCAACAAAGATTTGTTTGTCTCAATGAAAATCAGTAATGGTGTCATACAAACTTTGTTCAGCAATTTTACAGGTGTTGCTAATTCTTGTTCTAAAGAATTAGCAAAACAGTGCACCTGCTGTTTAAAGCCCAGAATATCTTTGGTTTATATCAAAAGGTCGAACCATCTAACTAGTAACTAGTAACACTGGCTACCTGATACCAGGGTCCTATAATGCAGAGACTCAATGCCTTTAGCATACAGAAAGCTTCCATTAAGtgccaatgttttatttttttgagcgATTAGTCGGTGGGTCTAATTGGCAATTGCTCATTTGCATCTAGCCGAAATAGTTGTGACATTAGCCTGCACTATTTCAAGCTAAATCTTCTTTTGTTAATAAGACTTATCCCTTGATATAATTGTAACATGtcaaaaatgcttttttgttgttttgtgtagtttttttttttttttcccccaaacaaGTCTACCTGATACCACCTTAGCCTTTTGATCGTTAATTTTGGTAAGTGCATTgtattgaaaatatgaataataatcacatgTGGTAAGTAACCAAAGCCCCGTCAGTGTGGTCCTGGTCATGTGTGAATCTCGGGGTGTAGTCTCACTGGCCCTGTGGTCCTGGGCTGTGATTTTGGAAGAGTGTCGAGCTGCTTGCGTTGACTTGGTCACCCGATCGTTTTAACTTCCCCTTCAGCATCAGCTTCCTTATAAGGTCTTGGTTTCCCATTGTTGTAAACATGTCACCCTCACGTGAGTCAGTACTTTGTTTAGCTCGTTAGGGACATTTATTCCATGGGGAATATTACTGTAGCTCTTTAAGGAGCCAATCTGCTTCATTCTTATTCCTGTCCCTGGGATCTGCATTTCCACTGGGACTCCCAATTCAAAGTGCTCCTCTTCTAACAATTATTCAGTGTggtattttagtgttttttttattaaacttccATTTGTATGAGTTTTTGATTCTCCTCCAGTTATAGGCGATTCAATGACAATGAATTGGATAAGAATGTTTAAACACAGCAGTGCATCCTGAaaagagattatttttcttcctctgttttTTCTGTAAGGTTTTAATTACTGAACACAGATGCTAGAAGGTTATCAATTTCAAGCAGTAATGTATTGCCGTGATCACCATTCACACTCCCAAAACCGCAGTATTCTTCTCATGCAAGCTGTACATAAGATGACAGCACATGGTAGCTCTAGGACTGTACTGGTTGCACAGCCAACCAACACTATATACACAGATGATAAGGCTGCCACAGATAGTATAAACATACCCTCTTATGATCgggtcattttgttttttcctggcTTTAAAATACCTTATGTTTTGTGACTGGCACTATATCAGTAAGGGCAGTACTTTGTTTTGCCACCCCGTTGCTTAATGCAAGGATGCAGTGTGCTGTCCCACTGTGAGATCAGCAGTCCTAGTGTGTGGGATTACCTTCTGGAATTGTCTATGACAAGGTACAAGGACAAGCGTTGGTGTGGTGCGTGCAGGCTCACCATGAAGTCCGTTTTTTCATCATGCTTGTGGGCCAATACAATAGTGCAAGACGATAATGTTATTTCCATGCAGTAATGTTCTTAATCCCCAGCAGGAACATAGAATATTAGTCATGTTTCTTGTGTTTAAATAAGAGAATTCTCTTTAAGCAATTATTCTGAAGCACTATGTCAGACATGTGCATCTACTAAATTATCttgatttatttcccattttgttttatttagttttggttGAATAGATGCACTAAGGAGATCGATTGTACATATCAGGATTGTTGTTATACTTTTATAATCATACATTAACATGAATGTTTATGCCCTGTAATTTGTTTAAGGGAAACTTTATCCCTCCCCGCCCCGACTAGCTGCAATAAGCAAACTGATCCTTTCATAAAAGTATTGCATTTATGGGTTAAGTGCACAGCAGAAATGGCAAACTATACTTGCTTTTGAAAGAAAGCAATGCGTATGAAAATACCCTCTGATGATTAATGCAGGCTGCTCGTAGTAACTGCTTTCTCTGTAAATAGCAAGACAATAGGGATTTGAATAGACCTctctgtccgtgtgtgtgtgcttgtgtgtgtcagtgtgcgagGGTGCAAGTGTGTCTGCGTGTGCGCGTGCATTTAGGGACCAAACACGTGTCGGTGTTCATATctgtaaaacagttttttttatacaacTTGGCttacaattgtaatattttacctgacaaaataaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68544 True 3196 lncRNA 0.37 1 26849213 26852408

Neighbor

gene id symbol gene type direction distance location
AMCG00009134 NA coding downstream 9421 26835528 ~ 26839792 (-)
AMCG00009132 NA coding downstream 22199 26823526 ~ 26827014 (-)
AMCG00009136 NA coding downstream 34744 26810895 ~ 26814469 (-)
AMCG00009137 NA coding downstream 59582 26788878 ~ 26789631 (-)
AMCG00009131 NA coding downstream 60748 26787018 ~ 26788465 (-)
AMCG00009135 NA coding upstream 71 26852479 ~ 26860729 (-)
AMCG00009133 NA coding upstream 8850 26861258 ~ 26866165 (-)
AMCG00009142 NA coding upstream 15310 26867718 ~ 26878879 (-)
AMCG00009141 ppp1r7,LOC102778584,LOC106568867 coding upstream 39863 26892271 ~ 26897656 (-)
AMCG00009143 LOC108277812 coding upstream 54122 26906530 ~ 26917479 (-)
G54797 NA non-coding downstream 170625 26678250 ~ 26678588 (-)
G54792 NA non-coding downstream 199220 26626806 ~ 26649993 (-)
G54706 NA non-coding downstream 441349 26407583 ~ 26407864 (-)
G54697 NA non-coding downstream 598356 26250546 ~ 26250857 (-)
G54682 NA non-coding downstream 758428 26090379 ~ 26090785 (-)
G54886 psmd2,LOC107579021 non-coding upstream 125699 26978107 ~ 26979245 (-)
G54911 NA non-coding upstream 174131 27026539 ~ 27033024 (-)
G54914 NA non-coding upstream 180744 27033152 ~ 27034216 (-)
G54978 NA non-coding upstream 568410 27420818 ~ 27422678 (-)
G55025 NA non-coding upstream 673278 27525686 ~ 27525979 (-)
G54821 NA other downstream 52559 26793541 ~ 26796654 (-)
AMCG00009121 NA other downstream 316803 26522633 ~ 26532410 (-)
AMCG00009105 NA other downstream 1317647 25529829 ~ 25531566 (-)
AMCG00009106 NA other downstream 1386523 25460606 ~ 25462690 (-)
AMCG00009100 NA other downstream 1672835 25173677 ~ 25176378 (-)
AMCG00009148 NA other upstream 258588 27110996 ~ 27153475 (-)
AMCG00009151 NA other upstream 461909 27314317 ~ 27335731 (-)
AMCG00009165 rpl35a,LOC106612432 other upstream 761190 27613598 ~ 27618172 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other upstream 1532675 28385083 ~ 28390096 (-)
AMCG00009215 gpr17 other upstream 2205533 29057941 ~ 29063030 (-)

Expression


Co-expression Network