Fish Transcriptome and Expression Database

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model fish

XLOC_006044

Basic Information

Item	Value
gene id	XLOC_006044
gene name	NA
gene type	non-coding
species	zebrafish (Danio rerio)
category of species	model fish

Chromosome Information

Item	Value
chromosome id	NC_007124.7
NCBI id	CM002897.2
chromosome length	52186027
location	29083087 ~ 29083291 (+)
genome version	GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00013406
ATTGTatggtaaaaaatgtaaatgcaaacaaACTGATGAATAATTTCTGATTGCAAATATTTGCATACAGGATTTATGCACAAATACCTCCACACGTTTACTAAATGAACTCCAGTGTGAGCCCGATAGTCTGTTTACTGTACATGCTCGGTTTTGAAAATAGATGAGGGCTTTATCCCTTTGTCATAGATGGATTTGGCTTTTG

Function

GO: NA

KEGG:

id	description
ko03230	Viral genome structure
ko05164	Influenza A
ko03200	Viral proteins

RNA

RNA id	representative	length	rna type	GC content	exon number	start site	end site
TCONS_00013406	True	205	lncRNA	0.35	1	29083087	29083291

Notice the +/- strand.
Display format: symbol/gene id: RNA id. (Except when gene id is similar to RNA id.)
You can browse transcripts by dragging.
A more detailed transcript can be viewed by the zoom button in the upper right corner.

Neighbor

gene id	symbol	gene type	direction	distance	location
XLOC_006043	CU639469.2	coding	upstream	158122	28924846 ~ 28924965 (+)
XLOC_006041	ly6pge	coding	upstream	168650	28903959 ~ 28914437 (+)
XLOC_006040	CU639469.1	coding	upstream	180167	28819768 ~ 28902920 (+)
XLOC_006039	NA	coding	upstream	265205	28808092 ~ 28817882 (+)
XLOC_006038	nsmce4a	coding	upstream	286450	28785814 ~ 28796637 (+)
XLOC_006045	unc5b	coding	downstream	44669	29127960 ~ 29227803 (+)
XLOC_006046	myofl	coding	downstream	155559	29238850 ~ 29288902 (+)
XLOC_006047	parga	coding	downstream	208720	29292011 ~ 29349324 (+)
XLOC_006048	ogdhl	coding	downstream	269551	29352842 ~ 29406695 (+)
XLOC_006049	NA	coding	downstream	363526	29446817 ~ 29449721 (+)
XLOC_006037	CU640488.1	non-coding	upstream	342718	28740235 ~ 28740369 (+)
XLOC_006030	NA	non-coding	upstream	515601	28565179 ~ 28567486 (+)
XLOC_006027	NA	non-coding	upstream	599681	28475601 ~ 28483406 (+)
XLOC_006053	CT025909.1	non-coding	downstream	507703	29590994 ~ 29591115 (+)
XLOC_006054	CT025909.2	non-coding	downstream	672002	29755293 ~ 29755427 (+)
XLOC_006056	NA	non-coding	downstream	805898	29889189 ~ 29891820 (+)
XLOC_006063	AL929330.1	non-coding	downstream	1168450	30251741 ~ 30251857 (+)

Expression

Co-expression Network