G54914


Basic Information

Item Value
gene id G54914
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 27033152 ~ 27034216 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU68623
gccaaaatggtttaatagaggtatgcaaaaaaaaaaaaaaaaaaaaaaagaaaatgatgtatagcgcatacaaaagggatagagatgaaacaaaatacaaagaatatgttgaactgcaaagtgATCTTAAGAAAGgcatcaggaaagcaaagagggaaatagaaacatagctcttgaagctaaaactaatgcaaaaagctttttgttCAATACTACatcagcaagaggtcaataaaggaggaagtgaaacagataaagggcaaaaattgaagtatcttggaaaacgaacaagatgtggcaaatgttctaaatgagtatttcacagaggtttttacaaaagaaaagacagataacatgccacaggttaacaatcaatCCAGTCAAATCGTAAgggagatcaggataaatgaggaggaggtactaaagggactagcaaaattaaaaacaaacaaatcacctgggccagatggtatatttccaacagtacttaaagaaatgagggaaattatttataggccactaactcaaatattccaaatgacacttagaacaggggatgtgccaactgactggaagacggcaaatgtcataccaatccacaagaaagggggaaaaaacgaGCATGAGCatttgtcagagctccctgcccccctggccTCCTCTactttgtaaactttatgttcttataacagccccacagactcaatcagtatgaaggtgaacatgatttagttaacgtgtacatttacaagtaaaacaaactaataactaaatacagcagatctgggtttcactccaaaacattaaggactagtttaataaatgcatccataagtccataaactcCATGACTGAATGTGCAACACTTTAGTTacattataacctgctatattgtagctgctgttactgtaggattaatcatgaaacgtacaattttgtttcaactgtaacttgccctggttgaGGGCATCTGCTAACTACATTACAAATGTTACGTTAGCAGTCCAGCCTGTAGGACAACTGACATTGTGCACGGttttaaaaatgctgcaaaATGGTTTAGAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU68623 True 1065 lncRNA 0.36 1 27033152 27034216

Neighbor

gene id symbol gene type direction distance location
AMCG00009143 LOC108277812 coding downstream 115673 26906530 ~ 26917479 (-)
AMCG00009141 ppp1r7,LOC102778584,LOC106568867 coding downstream 135496 26892271 ~ 26897656 (-)
AMCG00009142 NA coding downstream 154273 26867718 ~ 26878879 (-)
AMCG00009133 NA coding downstream 166987 26861258 ~ 26866165 (-)
AMCG00009135 NA coding downstream 172423 26852479 ~ 26860729 (-)
AMCG00009149 clcn2 coding upstream 135192 27169408 ~ 27200307 (-)
AMCG00009158 NA coding upstream 443303 27477519 ~ 27490312 (-)
AMCG00009155 NA coding upstream 461587 27495803 ~ 27503596 (-)
AMCG00009160 abcf3,LOC106580643,LOC106612436 coding upstream 473812 27508028 ~ 27516925 (-)
AMCG00009156 LOC108229448 coding upstream 483293 27517509 ~ 27522991 (-)
G54911 NA non-coding downstream 128 27026539 ~ 27033024 (-)
G54886 psmd2,LOC107579021 non-coding downstream 53907 26978107 ~ 26979245 (-)
G54841 NA non-coding downstream 180744 26849213 ~ 26852408 (-)
G54797 NA non-coding downstream 354564 26678250 ~ 26678588 (-)
G54792 NA non-coding downstream 383159 26626806 ~ 26649993 (-)
G54978 NA non-coding upstream 386602 27420818 ~ 27422678 (-)
G55025 NA non-coding upstream 491470 27525686 ~ 27525979 (-)
G55026 NA non-coding upstream 491831 27526047 ~ 27527494 (-)
G55153 NA non-coding upstream 836786 27871002 ~ 27871261 (-)
G55268 NA non-coding upstream 1454435 28488651 ~ 28505796 (-)
G54821 NA other downstream 236498 26793541 ~ 26796654 (-)
AMCG00009121 NA other downstream 500742 26522633 ~ 26532410 (-)
AMCG00009105 NA other downstream 1501586 25529829 ~ 25531566 (-)
AMCG00009106 NA other downstream 1570462 25460606 ~ 25462690 (-)
AMCG00009100 NA other downstream 1856774 25173677 ~ 25176378 (-)
AMCG00009148 NA other upstream 76780 27110996 ~ 27153475 (-)
AMCG00009151 NA other upstream 280101 27314317 ~ 27335731 (-)
AMCG00009165 rpl35a,LOC106612432 other upstream 579382 27613598 ~ 27618172 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other upstream 1350867 28385083 ~ 28390096 (-)
AMCG00009215 gpr17 other upstream 2023725 29057941 ~ 29063030 (-)

Expression


Co-expression Network