G55326


Basic Information

Item Value
gene id G55326
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28721540 ~ 28727970 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69139
CAGTGTTGCATAAGTTCCACGTTTATTTAATATCCGACAATGTGTTAAGTGTACACAAACATTTGAAGACTCTTAACTCCAACACTCAAATAGTTCGAGACATTGATTAAACTACTGCCCATTCATGATGGTACAAACGGGTTACAGCTGTATAATACATCGTCCACAGCAATCATGTTTATATACagagcaaagaaagaaaaaagaataaaagaaagaaagaaggatcATGATgatgtatttagttttacagAGTTAAGGAAGAACCCTTGGGTACTATTCAGATATGgaagcacagaaataaaatgacattttaaaaaatgtgcctTTCTCTTTTTTGAAGTTTATGTCTAACACAACATCTAGTAAGATGTGCTGAAAGTGATCACAGAGGTTCCAGGTGAGGGGAGAATGGGTCGAGAGTGACGTCTATCTGTGCACAACCTGCAGGATGTCATCTCAGAAACCGTCTCATGCACCATAAGCTGTGGCAGCCTAAATCAGGAACATTCTTCCCACACACCTATATGACAGTGTTTTGTTAAGCCTGTTTTGTTAAGGCTCTGTTAAGCCAAACTGGACCATAAAATTGGACAGTGTAAACATTAGGGACAGTCATGTCTGCTATAAGTTTAGAGCAAACCATAAATAATCAGACAGAATACATACACTAATCTAGCCATCAACTGTATTGTTGATCTTAATTTGGCCAGTGTTAGCTGAGGTCTACTgctataattacattttgttcaccCCTGCTCATAGTCAAAACTTTGAATGTAGTTTGAATGATGTGTCTATTACCTTAtatatttgtctatttttttccttttctatttacaaaacaaaaaagtctacAACAATGTATCTACAAAAGCAGATACCCTGTGGGTGACGACATGTTATTCTTGAGGgaaatgattaacaaaattctggtataaaaacacatgcagtCACTGGACTTTCACCCAGATTTCGCCAGGCAAaaagtgtctttgtgtgtgtcaattcaattaaataactataTGTTTGGGGTCCATCGCAGTActttagaaataatatatatactaataAGACATATTTACTGGTAAATAAGTTAGGTTTTGCAATGTAAATGATAATGACTACAAAGGAAAAAAGGTACAAATTTCAaactaattatataaatatcaaGTATTTATCTTGAGAGTTCCTGACCTTGCACTATATTCGTCTGTGAGAAACCACACAAGATTCCTGCTGCCACGTCATTGGGACAGACATTGTGAAGTCACGGGACAGTAGTTTTTTCCCAACTTCCCTTTCTCCAACAGCAAAAAAAGGCCACAAAATCATTACTGGCAAATTACACTTCATATTTTTGCGATACTCgtcttttatgttttgttttttaaatccccacaaaatgaaaaattactAGAGCTAAGTAACaagatgaaatgcaaaaatacgCTGTTCCACCAGTGAATGTCTTCCAGTATGAATATGATATGATAGTGGGATTTACtaatatatgcaaaataattaacCATTGTTTTTGGGCTATCCTACCAATCCACTTAAACTCCATCAGCTACGTGGGGCAGTCAGGGAGGGCTTTATAATCACACCCTAAGTGTAGTGTTCACAATCACAAAAGGAGTCTTCTCCAAATCACTAATTATTACTTTTCTCTTGTTCTAGAAACAACCCTGCATGATATAGCTAAGTCAGTTTGATATTCACGGCATGCAACGATACATACATTCTTAATATACAAAACAGAGCAGCAAAACTCTGGTGTATTCCACCGTAGCACAGTATCAGTTATAAAGCTTTCTTCTAAGTAATGGCTGAGTAAGGTGACCAAAAACTGAGATAActgcaatttaaacaaataaattaatacaaaacatcagCAACCTCAAACTCTGCTGAGcctttttgttgcatttttttttttttttgaaggacAAGTGTTCTTTAACATACAATATCTTGTTAGTGTTCAGCTCAGAGATTAGGGAATACTTTAAGCAGCTGTAGGGAGATGCAAATGTAACTTTTCATTGCTGCTATCCTGCTGTATATTGGCCTCTATGATCATCTGAGATTGAGACATAAGCATATTGTAATTATACTATTTTACCTGTATTGAAGCCCAGgttgtgtttgtatgcatgGATACAAATGTTATGCCAGTTTGGGATGACatgaaaaatatttgcataaatcaataacaaaaaataaagacgAGGTAAATCTttatttggtttagttttttactgTAGTGTGGTTGCTCTCCAGTGTCAATTACACAGACCAGTTGTTTTCACATCCTTTCTGTGCTTCTAATCTCCCTTCTTAGAAAACGGTCTTGGCATACATTTCCCAGAGCCCATCGTTCTGTTCTTTGACGCTCCCTAGCTGTGAGCATGCTCTGTAGGTTGGCTGGCCTCAGGCATGCTCTTCACTCCAGTGTTGTCTAGAACAGCTGGATGATTCAACCAAAAAGCTCTATCCTGATGTTTCCAAAAGACTAAATCTCTATCAGAATGCTCAGGAAACAAAATGCTTACACCTATGGTTGGCTGACCAAAGGCATTTACAATTTGCTCCCTGTGAGTAAAGCTTTGAGACTGAGATTCAAGATACCAAAAATAGCAAACATGCACCTTAATTACCGAGCACAGAGTACTAGAACACTGGAGAGTTTCCACTTGCAGAAcccagagaaataaaaatgtatatactatCCTTCCTACATTGACCGTGGTGGAATGTCTGTCGGGGCTACAGAAATCAACCAATAACATCTCATGTTATAGGAACATGTGACCTAGCAGAGGCTCTACACATTTACAGTGTTTCATATTCATTTGGGAATGTGGATTGCCTTGAAAAATGCAAATCCCGCATTTGTTAATCGATCACCCAATTTGCTGCATAGTTAGTGACTTAAGAGAGACTCTAATTCAGTTGAGGTCCTTGACTAGGTTGAACCTCAACAGTGTACTGTTTACTAGGTAAAATAAAAGGCTGCATTATCAATATTCTTCTTTGACCCTTTAGACTTTGCTAATGTGAATGGTTATtttgttgattaaaataaaaccctgtaCTTCCTTTGACACCTGCTGAATGTGTGTATGAAATTAATAGGAAATATgataaaaaatcataatattgtgtcactttgctgtttctaattgTTAAAAAAGCACAGTTAAATTTAAAGTTACAGTATGGGATCCTATGCCCCTGCTTCTTAAACCGTACACTTCATGTGTATACTGGGATTCTCATTATATCAGACAATCGAAAAGCATGTTCAAGTTCTCAGTTTGTGGGCACCTTAAATTTGGGAGCTCCAACAGTTCATTATTCACCCAAAACCCAATACATCAGCCTGATGTGAAGGAGTTGTGCAGGTTACTTGTTCCAACTCATTTCATATACTCTTCCTCTGCATGATCATGAAAATCACAGGTCTATCCGTTACTATCCAATTCCCATTTCGTTCTTCCCCTCTTCCTTTTTCACCCTTTGGTGAGGCTGACTGTAAAACTCTGCACCTCCACTATTAGATCTGTTGAATGGAATACATCTTAGCAGGAAAAAAGCTGGAATGCTGCTCTGACAGAAGCTGAACAGATATTCTTAAACTTTAAGGCAAAGGTAATGGCAATGGAAATAGACCTCCTCCAGGCCTTTTGTCACCATTTGAGCAACACCATGAGAGGCTGAGAGGGACCAGTAGGCCGGGGTCAATCTGCCTGGAGACAGGGAtctcatttaatgttttctgctcCCTCCACAGGGAAGGCGGTGAAATGAAACGCTAAACAAAGTGCATTAAGGAATCAATGAGAAATTAAAAGTGAGGAAAGTGAATGTCTTGCTGTGAACTTGTGAGAGCCGAGACCAGTACCATAAGCTACAAATAAGGTGCTAGACTGAGAACTAGAAAAAAGTCTGGCGGCAAGCTCAATCCATTCTCATGACCAAAACAAGCCTGCATACATAACTTGATATGTTCTCTAGTCtgatatgtataaatgtatagatGACGCTAACTAATTAAATAGATGCTTATAAAATGTCATATGTGACTTCTCATACAGGCACACTAAGTGTGCAGCATGTACATGTAATTTACAAACATAAACAGCATTTGCCTTacttatctatatatatattgttgggTTTTTGGGACAATAGGCAAAGGCTGAGatcaaatcaaagctttgacctaccctctaacagaaaactacaaacctctTGTCAATGGTATCTTTCTCATCAGATGCTTTTTTCTTCTCGTGAATCTTACCACTATCAAAtgcaggtttgtaatttgttaattgTGTGTGGgtcaaggtttttatttaatctggcccaaagTCAGTCAAGGAGAACAAAGGCAGCCAGATATACTGAGACAGTGTGGTAGATCAACAGAGGCTACAAGAAATGGATAGGGAGGGGCTACCTAGAGTAACTGCATAACAACCATACCTTCAATCACAGCCCTCAAAGACACAATGTACTACACATCTGTGCGATAGGGAATCAGAAAAGACTTCAGGATGCATTCACAGCAAACAGAGATACAAATTTAGAGAAATCAAGATTTTGTAAGTGCCAGTAATTGTTATGAAATGCACACATTCCCTGTCTGtgcataaaacagaaaagcCTTCATCAATCTCATCAATTAGAAGACTGTCGATGAAAAGCAGACAACCTTACAAGCTCACTTGCACATTTATCCCTTATTATGTCTAACAGCTTTATTCACAGCCAGCTAATGGTGTGAGCAGTGCTAAATAGCAGCAGGGTGGCACTGTAGTCAAAATTGCATGTAATTACTTTGTTATAGTCATCTACATCCATAGCAGcttagttttcattttgttttttgcacaaGGACATtccagttattttgtttgtttaaagaaaattgtGACCAATTAAAGGATCTATTCTGTAAAGTTTACAGTTTAGGGATACTTCTGAATAAAAGTGCAATATGCGGAAATTATCTTCTAgtttagtaaaaatataaatgtctttataaataaatacattaataaataaattattaaataaatacatacatacataaataaatagtgttttttttttaagaaaaaaaagctatCATGCAAAGCGAGAAAGAGGGAGTGACATTTTCGGAAAACCTGACTTAATGGACTGTCAGTACATCGTGTGGTTATTTTGCCTTGTCTGAGGTTAGCAAAGGTAAACCCCTACAATAAACTATAAAGTGTGCTCAGCCAGATGAGATCCTGTGCTGGAACCATCTGGGAGTGCACGAAGGCAAGATATCTGTCCTATTACTGactagacagaaaataaaataaaacatgcactaACCACCAACAGAACTCTTCGGGCTCAATTCAGTTAATATGTTAGTTTCTACACTGCCAAAGAAAAGTAATGAAAGCAACTCAAATACACATGAAAGCATCAAAGTTCTCATTATTCCCCGCCCTCCCCCTCCTATCCATCTTCCACCAATCTTGGCAACAGCTCTGTAAGCCATGAGATCTCACTGTTTCACTGGGGTAATTATAACCTTGAAGAGGATCTGAATGGATTCATGAAGAAATACTTGGTGTTTAACACTGACCTAAGTGCTGTGAAGTCACCAGAGGGCTGCTTTAACATTGTATAGCCGTACAGACACAGAGCTATAGAGGGTGCAGTTGGATGGTCATTGCACTGTTAATGAAGCTGGAAAATGGATGTCAAGAATGAAagaatctaaaaaataaattcacttttTGGAATCACATTACGAGAATAGAACTGGAGCAGCTTTACATAGAGAAATAACTGGTATTATTGTCAAATGAAGCCCTTGTCTATGGGgcagcaaaatgcattttttgaaaTGGAGAAAAAGCAGCTATTCTGGAAATAGACACCACCCCTCACTTCCTCCTTAACGCCCCGACTTGGAATATTCCAGAATGATAGGGTCGTGGTCGCCCTGGTAAATGATTTTCTGATGACTGGCCCATCAGTTACAGAGCCTGACAGACAGTACTGGGCCTTGCAATTCAGTCTTGGTTTGGTTGTGATAAACTGAGAGTGTGCAAGAGCAGGCAGGTTACATGAGAGACTGAAACAGCACAGGGATAGGGCGTTAGGTCAGGTGATCTATATACATGGTTAGTCTTTGTTTTCTatgtcattcattttgtttttgttttaagacttGTTGGGGAAGAGGATGGTGAGAGTTTTAGATCCTCATTTGTCCAGCTCTTCTCCTAGAAAGCTTTGATCTAGGGAACAAGAGAAGAAATGAGTTGATTACAGCCCTCTACGGAATATGCTCCTTTTGTTGAGTGTCTTCTATTTTTACACATCTTTATCTGTC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69139 True 6394 lncRNA 0.38 2 28721540 28727970

Neighbor

gene id symbol gene type direction distance location
AMCG00009196 NA coding downstream 72467 28643287 ~ 28649073 (-)
AMCG00009195 NA coding downstream 80929 28632355 ~ 28640611 (-)
AMCG00009194 LOC106560660 coding downstream 90589 28627412 ~ 28630951 (-)
AMCG00009193 NA coding downstream 105402 28610870 ~ 28616138 (-)
AMCG00009197 stk25b,stk25,LOC107585675,LOC107722570,LOC107693719,LOC107589848 coding downstream 121698 28582225 ~ 28599842 (-)
AMCG00009209 NA coding upstream 292668 29020638 ~ 29023928 (-)
AMCG00009212 NA coding upstream 301339 29029309 ~ 29052524 (-)
AMCG00009213 NA coding upstream 335793 29063763 ~ 29089403 (-)
AMCG00009211 NA coding upstream 362085 29090055 ~ 29103281 (-)
AMCG00009210 NA coding upstream 392445 29120415 ~ 29135151 (-)
G55268 NA non-coding downstream 215744 28488651 ~ 28505796 (-)
G55153 NA non-coding downstream 850279 27871002 ~ 27871261 (-)
G55026 NA non-coding downstream 1194046 27526047 ~ 27527494 (-)
G55025 NA non-coding downstream 1195561 27525686 ~ 27525979 (-)
G54978 NA non-coding downstream 1298862 27420818 ~ 27422678 (-)
G55333 NA non-coding upstream 27328 28755298 ~ 28755633 (-)
G55359 NA non-coding upstream 115503 28843473 ~ 28893883 (-)
G55404 NA non-coding upstream 327743 29055713 ~ 29057241 (-)
G55488 NA non-coding upstream 730645 29458615 ~ 29458827 (-)
G55551 NA non-coding upstream 1031557 29759527 ~ 29762165 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 331444 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 1103368 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 1385809 27314317 ~ 27335731 (-)
AMCG00009148 NA other downstream 1568065 27110996 ~ 27153475 (-)
G54821 NA other downstream 1924886 26793541 ~ 26796654 (-)
AMCG00009215 gpr17 other upstream 329971 29057941 ~ 29063030 (-)
AMCG00009229 ccd50,LOC106613514 other upstream 932990 29660960 ~ 29704929 (-)
AMCG00009235 NA other upstream 1249967 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 1521901 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 1871504 30599474 ~ 30657612 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G488147 NA non-coding CI01000340 null 2405312 ~ 2427227 (-)
rainbow trout (Oncorhynchus mykiss) G459779 NA non-coding NC_048569.1 CM023223.2 96117689 ~ 96120785 (-)