G55357


Basic Information

Item Value
gene id G55357
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 28897976 ~ 28898693 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69185
TTTTAGCTGTAACTATATTGTAAACAAGTTCATGGAAACTATGGCAGAAGACTGACCACATATTTGGATGATTTGCAAAACATAGGTATCATGTATCCTATAAGTATCATGTTGCAGATACAAATAACCCATGGAAACAGTCGGTTTTCACTATCtttctcaatatttttttaccacCATGGAATTACTAGTGCTaccttttttggtttttaagaCTTATCTAGCCAGTTAAAAACATATAGCACATTGAGTTTCATGGAACACCTCGACCATTAGCCTGATGTCATAGAAATGGGTATTCATCTATGGTTTCAAACAATTTGTTCAGTAGTTCAGACATTGTGCTATAGAAGTAGGTGGAAGTTGTGATTGAAGTAATGGACTTAGTTTTGCCTTAACCCATTTTGCTGAGGGAACAGCAACCTGACCATGAGGACGAGGCCATTGGACCCTCCTTCACACGCATGGTGGATGGAGCCAAGGAGCCACTGCAAAAGCTGAGACTAAGGAGACGGAGCGATGTTGTTCTGCGTTTAAGCAAGAGGGCAGCGTAGTTGCGGCACTATGGGAGTGAGCTACTGACACAGGCTAAAGGAACTTGTTGCAAAGTATTTGATAAGAGTGTGTATGTGAGGATATGTCTCATTGGTTAAGCTTGGAACAGAGTGATGTGTGATTGGCGGTTGTCTACCTCCCAAACTTTTAGTTGTAATCTCCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69185 True 718 lncRNA 0.41 1 28897976 28898693

Neighbor

gene id symbol gene type direction distance location
AMCG00009203 ryk coding upstream 4932 28867586 ~ 28893044 (+)
AMCG00009205 NA coding upstream 61564 28802969 ~ 28836412 (+)
AMCG00009198 NA coding upstream 135458 28756555 ~ 28762518 (+)
AMCG00009200 espnl coding upstream 142802 28736283 ~ 28755174 (+)
AMCG00009201 NA coding upstream 162123 28729396 ~ 28735853 (+)
AMCG00009206 NA coding downstream 11620 28910313 ~ 28926828 (+)
AMCG00009202 NA coding downstream 115699 29014392 ~ 29019892 (+)
AMCG00009214 LOC106599142 coding downstream 176388 29075081 ~ 29102077 (+)
AMCG00009221 NA coding downstream 410163 29308856 ~ 29309773 (+)
AMCG00009218 NA coding downstream 467945 29366638 ~ 29402226 (+)
G55308 NA non-coding upstream 264644 28632355 ~ 28633332 (+)
G55300 NA non-coding upstream 267679 28627663 ~ 28630297 (+)
G55257 NA non-coding upstream 432750 28464562 ~ 28465226 (+)
G55205 NA non-coding upstream 514473 28383000 ~ 28383503 (+)
G55204 NA non-coding upstream 516677 28380980 ~ 28381299 (+)
G55394 NA non-coding downstream 130625 29029318 ~ 29031478 (+)
G55461 NA non-coding downstream 286228 29184921 ~ 29185184 (+)
G55463 NA non-coding downstream 288001 29186694 ~ 29187955 (+)
G55487 NA non-coding downstream 559728 29458421 ~ 29458743 (+)
G55512 NA non-coding downstream 742796 29641489 ~ 29641936 (+)
AMCG00009204 NA other upstream 98376 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 1271965 27613583 ~ 27626011 (+)
AMCG00009129 NA other upstream 2101208 26793537 ~ 26796768 (+)
AMCG00009108 NA other upstream 3310361 25584882 ~ 25587615 (+)
AMCG00009104 NA other upstream 3404403 25489711 ~ 25493573 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other downstream 30199 28928892 ~ 29011768 (+)
AMCG00009208 NA other downstream 204915 29103608 ~ 29108227 (+)
AMCG00009220 lsm2,LSM2,smx5 other downstream 272630 29171323 ~ 29174731 (+)
G55573 NA other downstream 1009218 29907911 ~ 29911564 (+)
G55591 NA other downstream 1096433 29995126 ~ 29995438 (+)

Expression


Co-expression Network