G55512


Basic Information

Item Value
gene id G55512
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29641489 ~ 29641936 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69374
CAGTACTCACCCGGCAGCTGCAGCAGCGAGTCGTACACTTTGCACTGGACCTGCCCGGTGCTCTGCGACACGCACGACATCCAGAGTCCCTCATAAATGGCCTGCGCGGTGACAATGTTGTCGCCTGAATAGGACGATGCTTTCCACTCGGACATGGCCGTGGAGGCTATGAAACCGATGAAGCCTAGAAATGCCAAGGGTCCAAAAGCAACTCTGGAGTTCGCCCTTGCAGCTGCTCAGCACTGGCACACACCCAGGACTGTCTGAAGCGCGGCGGTCTCTGGGATGCACCTGAATGTGGATGCTCCACCTCGGACCCGCACTTAAACTGGGTCCAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69374 True 339 lncRNA 0.58 2 29641489 29641936

Neighbor

gene id symbol gene type direction distance location
AMCG00009222 tp63 coding upstream 68436 29563108 ~ 29573053 (+)
AMCG00009223 NA coding upstream 111995 29528879 ~ 29529494 (+)
AMCG00009224 NA coding upstream 154334 29484543 ~ 29487155 (+)
AMCG00009225 NA coding upstream 170965 29461485 ~ 29470524 (+)
AMCG00009219 LOC100694679,LOC102204076,LOC108271779,LOC105925372,LOC102787755,LOC102295835,LOC101474685 coding upstream 222199 29416436 ~ 29419290 (+)
AMCG00009227 NA coding downstream 6681 29648617 ~ 29653337 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding downstream 75091 29717027 ~ 29742605 (+)
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding downstream 216989 29858925 ~ 29860369 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 366866 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 544964 30186900 ~ 30208729 (+)
G55487 NA non-coding upstream 182746 29458421 ~ 29458743 (+)
G55463 NA non-coding upstream 453534 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 456305 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 610011 29029318 ~ 29031478 (+)
G55357 NA non-coding upstream 742796 28897976 ~ 28898693 (+)
G55564 NA non-coding downstream 216359 29858295 ~ 29932152 (+)
G55586 NA non-coding downstream 333667 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 351686 29993622 ~ 29994641 (+)
G55596 NA non-coding downstream 353627 29995563 ~ 29995870 (+)
G55597 NA non-coding downstream 356293 29998229 ~ 29998486 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 466758 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 533262 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 629721 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 841889 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 2015478 27613583 ~ 27626011 (+)
G55573 NA other downstream 265975 29907911 ~ 29911564 (+)
G55591 NA other downstream 353190 29995126 ~ 29995438 (+)
G56060 NA other downstream 2519824 32161760 ~ 32165365 (+)
G56368 NA other downstream 4358860 34000796 ~ 34031445 (+)
G56369 NA other downstream 4373734 34015670 ~ 34018815 (+)

Expression


Co-expression Network