G55551


Basic Information

Item Value
gene id G55551
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29759527 ~ 29762165 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69429
ACTAGAAGGGTCTGTAGAAACAGATAGCACTTTAATGAGTGAGGTGAGCACTCGAGGAAAACATGACTGACAGGGCCTGCTCCAGGGGGCTCTGGAAAGATCTGAGCGCCCAGTGCATACAGCAATGGTAAGAAATGGACTTTACATTTCAATCGCCCTCGCTTTTttaaggaaattacatttttattactatgcatttagattttcttaaatacaatcacatttaataaatacaccacCTTTGATGGGAAACATCATGCAAGGCCTGAACTCAGATAAAACAAAGGATTTTCtgcaacaagaaaacaaaaaacaaaataaacaaaaaaacatttttatgttgaaCAAAGCACTCAGAATACTTTATGGAGAATCATATTCTACGATTAAAGACCAaggtatatttgtattacagacAATATGTACTTTTCTTTGAGCTGAACAACAATGATAAAATTCAGAATATGCCAACCGCTGCATGGTTTTACCCTTTTGGACCAACTGAGTAAAACCTTCAGCAAAGACCTATAAGAAATAACCTGGCACTCATGAGATACAGAGAAAACCCACTCTCTAGTCTCAGTTTCGAGTACCTCAGATAAACAAATCTATAACGTTCTCACAGAAGAAGCTTGGAAGTGCATTGTGCATCCGAGTGTGTGATGGGCAGGCAGTCGTAAAAGTACAGAGTTCCTGAAGTGGAAAGTGAGCAAAGCGAGTATTTCTTTGCATTGGGATGCCTTGAGAGCAGTGTCGTTGCCAAGCAAAGACAGGAACATGAAGCAAATGGTTCACATTCTTCCAAAATGTTCACCTTATAAACTGCATTCTCGAGAGAGTTGTCCTActctaaaaaattaaatgcttccTGTCCCTCCTGTGTTTATGGACTGCCGGTGTGCAGAGGCCTATAAAACCAGGCGTCGAATGGAAACCAAAGCTGTATCCAAGCTGGCTGTGACAGGAAGGatatagtgtttttttctgattattgttttttttgtatttaatatgcgTAGGGTTGAATGTCAGGGGGAAACAAACACAAGCGACAATCGTGACAGAGAAACCGAACACCCCACTGCTTATCACGGCCATACTCATTTCACTGAGCAAACAAAAGGTGTGGACGTCTGAGGTCCACAGCAATTCAGTCCCCCTGGACAAATCATAGGTGTTACACACGCAGACCGGCACTCGCACATCAATCCCGCTGAAAGAGCAAAGAGTATTCCTTCCatcatgtgtatttttgtttagtttttcctcaTTATTCACCTTTTCAAGACCCAGTGCTGACTCAAATGACATACTATACCTCATAAGTGCTCTAAAGACTGTTACAAAGCAGTCCCTTTcatttgtgtgaagaagtgagCTTTAAACCAGCGAGCCATTCAAGATTCGTCTCGAGAGACTGTCTCTGAACTCTTTTAATACACAACAAAAGGGGTATTTACATGCATCTATATATTGGGGAAATCTGGCCGGGCGAACAAGAAAACAGTTCTGTAAAGCCCATCACCCTCTTTTCATCTGATGGAGCACAGCATAAAGTCAGATTGACAGCATCTGACTGCAGGCCATGATTCTGTCGATCGTTCCTGAACATCTAGGATACTACTAAACAGAAGGTGGTATAAATCTGAACGTCTGTCTGTTAACACTCACTTCCTGCATCCCAAGATCCACATTGCATTAGTTCGATGACCAGTGCGCTGAATCAGCAACAGATGTGGAATGGTGTAAGGGCTTAATAAATAGCAGGCCTGCCataagggaaaaaaagtttttcccTCCGTACAAAATTCCTATTTATTAGAAACAGGGGAAAACTGGCCATAACCaaggaagtatttttttttccttcttttttatatatgcagGACATGCCTGCTGTCTGGTGGATGTTGTTAACTGTTTTTTATAAACCAGACAAAATCAGACATCTGGACTGAATTGGTGTGCCGTATCGATCTGTGCTTTTCTACAGAGGAAATGTAAATTGGAGCATAAAAGGAAGCACCTTACACTCATCTCTGGGTGCTCAATAGGCTTCATTTCACTTTAGATTTTACCAAGAATTTTAAAATGGGGTAAATTGCTTGTTCTTAAATTGTGCCAAGCTAATTAGGccataaaaattaaaatctatgaGAAAAAGGAATAGATGGGCAGTAATTTACAAGACAGGGTGAggacatgtttgttttctttgatcaGTGCATATTCTGTGTGATCCACAGTCTGTACCCAAGGTCTCtgtaaaagaaagagagaaaaatatgaattaagactttttttttttttgcctgacAAGTTCACCTTCAACAGCCTGTCCctattttctttaacatttcatAACTTATGAGGCACACAGACATCAatgttacattatatttcaaacaGATTTTTAACCTCAAGCAACTTTGACAGCATGTTGAAccaaaatgaatggaaaatgtaGGGAGGTACAGTATAATGTGTTCAGTAGCTTCAAGGTATGGGCAACAGGCTTGGCCAAATACAATAACTAGGTATAGAAACCTAGTCAAGTATAACAAAGCAGTCAGGGGTCAGATGTACTATAGAAAAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69429 True 2596 lncRNA 0.39 2 29759527 29762165

Neighbor

gene id symbol gene type direction distance location
AMCG00009232 NA coding downstream 53724 29705333 ~ 29705803 (-)
AMCG00009228 NA coding downstream 117615 29636991 ~ 29641912 (-)
AMCG00009230 NA coding downstream 171673 29573069 ~ 29587854 (-)
AMCG00009217 NA coding downstream 562384 29187536 ~ 29197143 (-)
AMCG00009216 NA coding downstream 587736 29163273 ~ 29171791 (-)
AMCG00009234 NA coding upstream 146444 29908609 ~ 29927458 (-)
AMCG00009233 atp13a3,LOC106613657 coding upstream 167941 29930106 ~ 29955770 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding upstream 229411 29991576 ~ 29998483 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding upstream 367623 30129788 ~ 30138314 (-)
AMCG00009243 xxylt1,LOC107715806,LOC106573863,LOC107718247 coding upstream 400255 30162420 ~ 30171530 (-)
G55488 NA non-coding downstream 300700 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 702286 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 865644 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 1003894 28755298 ~ 28755633 (-)
G55326 NA non-coding downstream 1031557 28721540 ~ 28727970 (-)
G55610 NA non-coding upstream 213464 29975629 ~ 29976269 (-)
G55648 NA non-coding upstream 473994 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 718614 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 729073 30491238 ~ 30491980 (-)
G55760 NA non-coding upstream 890747 30652912 ~ 30655021 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 54598 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 696497 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1369431 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2141355 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 2423796 27314317 ~ 27335731 (-)
AMCG00009235 NA other upstream 215772 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 487706 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 837309 30599474 ~ 30657612 (-)
G55878 NA other upstream 1172399 30934564 ~ 30937251 (-)
G55881 NA other upstream 1182202 30944367 ~ 30947211 (-)

Expression


Co-expression Network