G55573


Basic Information

Item Value
gene id G55573
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29907911 ~ 29911564 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69455
actctcagaccatgagaaacaaaattctcttatctgatgaaacaaagattgaactctttggcctgaatggcaagcataacataacataacaaaatgtggaaaaagtgaagcgctgtgaatactttccggatgcactgtataaacGTGTATAAGCATCTGTCTAAAATATAGATGCATTTAGTAAACATACTAATTTCACACTGTATATTTCAGTATACATTCTTAATTGTATTACACACAAACTTTACATGATTGCAGCTTTAGTGTGATgcttacattatattttcaaaactaaacattaaaaaatactttattttgcaacatttcaacagttaattgtttattgaCTATAAAATAACGGGTGCCCACAGAGTGTCTTCTGTCGGCTTCTATTGGATGTCTACCTACGTATGAGACCTATTTAATGAGACATTTCTGTAAATGATAAGACATGACTTAATTTCAAATCCCCAAATTTTCACAAAGCCATTGTCTCAGTCTGCATCAAAGGCTGAAGAATCACCTCCTTCTTGTAGGAAAAATGCACCAGGTTGACAGCTGCATAGATCTTCTCTTCATGCATAAGAGACTTGTAAAGGGAATACGAATATCCGACCAAGACCACTGTGCAACAAATTTCCACAAATAGCATAATGGTGTATGACACCATCAGCCACTCGCAGTAGGACATGCTGCTACTGCTTTGGACACCATATGAATGGATTGCTGCTCCTGGAGTGGAGGTAACAAACCCAGTTGTTGTCCAGGTGGCTGTAGGTGTAGATGTGGATGTAAATGTGGATGTAAATGTGGTTGTCTTCATTGCTGTAGTATGGGTTGTGGTAGTTGTATAAAGAAAAGTAGTGTCTAATGCTGTGGTTGGCGCAGTGGTTGTGAGTTGTGTAGATGTGGAGGTCACCTGCTTGGTTGTAGTGGCCACTGTGGTTGGCAATGTTGTGGTCATAGCAGTTGTTGTTTCTTCCTTTGTTGTCGTAGGCCAGGTTGTCATAGTCAGGATGGTTGTTGCAGGAACAGGGACCGTGGTCGTAGTTGGAGCTGTAGTTGTGGTTGGGATCGTAGTCGTAGTTGGAGCCGTAGTCGTGGTGGGGACCGTGGTCGTAGTTGGAACAGTGGTCATGGTGGGGACCATGGTCGTGGTGCGGGCCGTGGTCATAGTTGGAGCCGTGGTGGTGGTTGGAACAGTGGTCGTGGTGGgagctgttgttgttattgggCAAATAAGCTGTTCCTTTAATAGGGATTTAATACTTTGTCCCTTTAAATTGTCAGGACTTTCACATGTCTCTGGAGGAGTCGTTTTGACCTTGGCTGGATTTTCTTTGATCCAATTAAACAGATATATTAAATGACAGTCACAATGCCAAGGATTATTGTTTAGAAATACTTTTCGAAGACTTGGTAATGTGCCAAATATGTATTCAGGAAGCGTTGTCAGTTTATTACCCTTTAGATTGAGAGTGGTCAGTTTAGGCAAATCGTAGAAAGTCTTGTTGTCTAAATTCTGAAGGAAATTGTTTTGTAAGTTCAGGTCTGTGAGCTTCTGAAGACCCTCAAAATACTTACTTGACAAATTGGCAAAGTGGTTTCCTGACAGTTGAAGTTTCTTTAGGTTTGTGAGGTTACTGAATATCCCCCAGGGGAGGCTAGTAAGGTTGTTGTTTGCAAGACTAATCTCAGTTAATTTGGGCATTGGTCCAAAAAGAGCAGGGGGCAGGCTTGTTAACTGATTATCATTCAGAGTGAGCTTCTGCATATTAGGAAGACCAAAGAAGATCCCTGTCGGTAGATCAGACAGTGAATTCTTATCCAGAAATAATTTGTGTAACTTGTTATTGTTAGAAAATAAGCCTGGAGGCAATGTTTTAATCTTGTTGCCATTTAGTCCAATGTCAATCAACTCAGACAGATCATCGAAGATCCCATCTGGAATCACAGTGATCTGATTCTCATAGAGTCTGAGTTTCGTTAATTTTCTCAGTTTTGTGAACCACTCAATTGATAGGGATTGGATGTTATTTTTGGCCAAGTGAAGAAAGAGCAGATTTTCCAGCTGATTGAATGCTTCATTCGAAATTGAAGAAATCTGGTTGTTTTGCAGACTAAGGTCTTCCAAGTTTGAGAGATTAGCAAATAACCCCTGCTCTATGGTTTGAAGATAATTTGTTGTTATTCCAAGTATTTTCAAGGTACTCAAATTATGAAATGCACCCACAGGCAGAGATGACAGTTGTGTGTTTGaaaactcaatttctgtaatgttAGTCAAACCTTCAAATGCACCAGCTTCTACTGAACCAACATAATTATTCAAGAAAACCACCTTCTGTAGAGCTTGTTTGTTCATGAAGGCCCCAGATTTGATTGTTGAAAGTCTACTGTTCAAAAAATAGACTTGTGTTACACCACTTTTTATAGTGGCGGGGATTTCTGTGACATTTTTGTAGACATCTTGATAGGGTTCATCATAGTCTCCAAATGCACAGTTGAATAGAAAGGGCAGAAGAAAGATTACAATTCCCTGATGCATTTTATCTCCctgaaaaacagttttgatGTTATCAATCACTactgcacattatatatattacataggCTAATGCTGTGTTGTGGAATTTAAAA

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69455 True 2640 TUCP 0.39 2 29907911 29911564

Neighbor

gene id symbol gene type direction distance location
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding upstream 47542 29858925 ~ 29860369 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding upstream 165306 29717027 ~ 29742605 (+)
AMCG00009227 NA coding upstream 254574 29648617 ~ 29653337 (+)
AMCG00009222 tp63 coding upstream 334858 29563108 ~ 29573053 (+)
AMCG00009223 NA coding upstream 378417 29528879 ~ 29529494 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 97238 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 275336 30186900 ~ 30208729 (+)
AMCG00009239 NA coding downstream 307305 30218869 ~ 30223477 (+)
AMCG00009250 NA coding downstream 353689 30265253 ~ 30298128 (+)
AMCG00009246 dis3l2 coding downstream 401230 30312794 ~ 30327528 (+)
G55512 NA non-coding upstream 265975 29641489 ~ 29641936 (+)
G55487 NA non-coding upstream 449168 29458421 ~ 29458743 (+)
G55463 NA non-coding upstream 719956 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 722727 29184921 ~ 29185184 (+)
G55394 NA non-coding upstream 876433 29029318 ~ 29031478 (+)
G55586 NA non-coding downstream 64039 29975603 ~ 29976267 (+)
G55595 lsg1 non-coding downstream 82058 29993622 ~ 29994641 (+)
G55596 NA non-coding downstream 83999 29995563 ~ 29995870 (+)
G55597 NA non-coding downstream 86665 29998229 ~ 29998486 (+)
G55620 NA non-coding downstream 230648 30142212 ~ 30222127 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 733180 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 799684 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 896143 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 1108311 28766454 ~ 28799600 (+)
AMCG00009164 NA other upstream 2281900 27613583 ~ 27626011 (+)
G55591 NA other downstream 83562 29995126 ~ 29995438 (+)
G56060 NA other downstream 2250196 32161760 ~ 32165365 (+)
G56368 NA other downstream 4089232 34000796 ~ 34031445 (+)
G56369 NA other downstream 4104106 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 4451855 34363419 ~ 34369257 (+)

Expression


Co-expression Network