G55586


Basic Information

Item Value
gene id G55586
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29975603 ~ 29976267 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69469
caaacttttgaatatataatatatacacacacatacatacacacacaaacacaaatatacatacaccaTTCAAGGAAATTGGGGAAGAGAGTTTCCTTTATATTGTGCTTCTAATCGTCATATTGTCCACATATCAGAGTAAAGGAAGTTCAATATCTGCTGATCagttaaaataagaataaggCCAGCCATGCAGcagaaatatagttttaaaagagATTTATTGAGGGAAAGATGTCTGTGCTGCCAAGTCTGCTTCAGCTTCTGTCTGAGTCACAAGCCTTGACTAAAGACTTGATAACAAACCTCACTGATAGCATAAAGGAAATTACCATGTAAGCCTCTGGTACTATAGGCCATGGAATGAGCTCTATTAGTGTGAGTTAATGCCAGATCTTTGATAGTCTTTATTATTTAGTACAgtccatatttaaaaaaaaaatatatataaaaagcaatagaaatataaaaatataattatcagaCCGCCAAAAtagacacttttatttttagacataATTAACACGCACATCTTCAGACTACTGCAGCAATCTACTAACAAACTGTGACACAAGAAACCGCTGTGAATAAAACCATGCAAAATGCCAATgtaaaaaatactaatattgtATGATTCATTTTCTTACCCTCTTAATATATTAATT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69469 True 665 lncRNA 0.32 1 29975603 29976267

Neighbor

gene id symbol gene type direction distance location
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding upstream 115234 29858925 ~ 29860369 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding upstream 232998 29717027 ~ 29742605 (+)
AMCG00009227 NA coding upstream 322266 29648617 ~ 29653337 (+)
AMCG00009222 tp63 coding upstream 402550 29563108 ~ 29573053 (+)
AMCG00009223 NA coding upstream 446109 29528879 ~ 29529494 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 32535 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 210633 30186900 ~ 30208729 (+)
AMCG00009239 NA coding downstream 242602 30218869 ~ 30223477 (+)
AMCG00009250 NA coding downstream 288986 30265253 ~ 30298128 (+)
AMCG00009246 dis3l2 coding downstream 336527 30312794 ~ 30327528 (+)
G55564 NA non-coding upstream 43451 29858295 ~ 29932152 (+)
G55512 NA non-coding upstream 333667 29641489 ~ 29641936 (+)
G55487 NA non-coding upstream 516860 29458421 ~ 29458743 (+)
G55463 NA non-coding upstream 787648 29186694 ~ 29187955 (+)
G55461 NA non-coding upstream 790419 29184921 ~ 29185184 (+)
G55595 lsg1 non-coding downstream 17355 29993622 ~ 29994641 (+)
G55596 NA non-coding downstream 19296 29995563 ~ 29995870 (+)
G55597 NA non-coding downstream 21962 29998229 ~ 29998486 (+)
G55620 NA non-coding downstream 165945 30142212 ~ 30222127 (+)
G55649 NA non-coding downstream 260657 30236924 ~ 30242731 (+)
G55573 NA other upstream 64039 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 800872 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 867376 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 963835 28928892 ~ 29011768 (+)
AMCG00009204 NA other upstream 1176003 28766454 ~ 28799600 (+)
G55591 NA other downstream 18859 29995126 ~ 29995438 (+)
G56060 NA other downstream 2185493 32161760 ~ 32165365 (+)
G56368 NA other downstream 4024529 34000796 ~ 34031445 (+)
G56369 NA other downstream 4039403 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 4387152 34363419 ~ 34369257 (+)

Expression


Co-expression Network