G55596


Basic Information

Item Value
gene id G55596
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29995563 ~ 29995870 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69480
TGAATTTACTTCCGTGCTGTGCTTTCTTCTTGTAAATCGTGtctatatattttgtgcatGATGTACCTTTTCTTCTGCCTCTAGCCTGTTGGCTTCTGCCAGAGCGGACCAGAACACAGCCCGGATGCCCTCTCTCTCGAAGTGCCGTGCCCAGGCCCTGCGCTGCGGCCTAGTCAGCAGGTCTGCCTTGTTAACCAGCACCATGTTCTCCTTCTCCTTGGAAACCTCCTTCACATACTTCTCCTGCAAGGAGGCAAGACAAAGCAACAAAAATGGGTTACTCACAATGCAAGAAActaaaaacagca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69480 True 308 lncRNA 0.49 1 29995563 29995870

Neighbor

gene id symbol gene type direction distance location
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding upstream 135194 29858925 ~ 29860369 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding upstream 252958 29717027 ~ 29742605 (+)
AMCG00009227 NA coding upstream 342226 29648617 ~ 29653337 (+)
AMCG00009222 tp63 coding upstream 422510 29563108 ~ 29573053 (+)
AMCG00009223 NA coding upstream 466069 29528879 ~ 29529494 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 12932 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 191030 30186900 ~ 30208729 (+)
AMCG00009239 NA coding downstream 222999 30218869 ~ 30223477 (+)
AMCG00009250 NA coding downstream 269383 30265253 ~ 30298128 (+)
AMCG00009246 dis3l2 coding downstream 316924 30312794 ~ 30327528 (+)
G55595 lsg1 non-coding upstream 922 29993622 ~ 29994641 (+)
G55586 NA non-coding upstream 19296 29975603 ~ 29976267 (+)
G55564 NA non-coding upstream 63411 29858295 ~ 29932152 (+)
G55512 NA non-coding upstream 353627 29641489 ~ 29641936 (+)
G55487 NA non-coding upstream 536820 29458421 ~ 29458743 (+)
G55597 NA non-coding downstream 2359 29998229 ~ 29998486 (+)
G55620 NA non-coding downstream 146342 30142212 ~ 30222127 (+)
G55649 NA non-coding downstream 241054 30236924 ~ 30242731 (+)
G55707 NA non-coding downstream 499673 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 603604 30599474 ~ 30602032 (+)
G55591 NA other upstream 125 29995126 ~ 29995438 (+)
G55573 NA other upstream 83999 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 820832 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 887336 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 983795 28928892 ~ 29011768 (+)
G56060 NA other downstream 2165890 32161760 ~ 32165365 (+)
G56368 NA other downstream 4004926 34000796 ~ 34031445 (+)
G56369 NA other downstream 4019800 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 4367549 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 5393044 35388914 ~ 35389327 (+)

Expression


Co-expression Network