G55597


Basic Information

Item Value
gene id G55597
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29998229 ~ 29998486 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69481
CTGcgatataatgtattaaattactTATACAATAAAAGTAGGTACCCAGGAATCTCCTCTGTTGCCTCGACCAGCCAGTTGTCTGTCTTTCATTAAGGCTCTGCCTAACCCAGCGCCACCGCCTCCACTTTTCTTCTTTCCCATCTTCCTATTTCACATCAAACGAGATATTTCAAAGCCCTGTTGATTTCAAACGAGTTATGGACAAGACATACAGCCCCTGCACTGGCTCCTCAGCACACCATGTGAGGACTGTTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69481 True 258 lncRNA 0.45 1 29998229 29998486

Neighbor

gene id symbol gene type direction distance location
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding upstream 137860 29858925 ~ 29860369 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding upstream 255624 29717027 ~ 29742605 (+)
AMCG00009227 NA coding upstream 344892 29648617 ~ 29653337 (+)
AMCG00009222 tp63 coding upstream 425176 29563108 ~ 29573053 (+)
AMCG00009223 NA coding upstream 468735 29528879 ~ 29529494 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding downstream 10316 30008802 ~ 30009842 (+)
AMCG00009238 NA coding downstream 188414 30186900 ~ 30208729 (+)
AMCG00009239 NA coding downstream 220383 30218869 ~ 30223477 (+)
AMCG00009250 NA coding downstream 266767 30265253 ~ 30298128 (+)
AMCG00009246 dis3l2 coding downstream 314308 30312794 ~ 30327528 (+)
G55596 NA non-coding upstream 2359 29995563 ~ 29995870 (+)
G55595 lsg1 non-coding upstream 3588 29993622 ~ 29994641 (+)
G55586 NA non-coding upstream 21962 29975603 ~ 29976267 (+)
G55564 NA non-coding upstream 66077 29858295 ~ 29932152 (+)
G55512 NA non-coding upstream 356293 29641489 ~ 29641936 (+)
G55620 NA non-coding downstream 143726 30142212 ~ 30222127 (+)
G55649 NA non-coding downstream 238438 30236924 ~ 30242731 (+)
G55707 NA non-coding downstream 497057 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 600988 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 948880 30947366 ~ 30950209 (+)
G55591 NA other upstream 2791 29995126 ~ 29995438 (+)
G55573 NA other upstream 86665 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 823498 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 890002 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 986461 28928892 ~ 29011768 (+)
G56060 NA other downstream 2163274 32161760 ~ 32165365 (+)
G56368 NA other downstream 4002310 34000796 ~ 34031445 (+)
G56369 NA other downstream 4017184 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 4364933 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 5390428 35388914 ~ 35389327 (+)

Expression


Co-expression Network