G55610


Basic Information

Item Value
gene id G55610
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 29975629 ~ 29976269 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69510
NNAATTAATATATTAAGAGGGTAAGAAAATGAATCATacaatattagtattttttacATTGGCATTTTGCATGGTTTTATTCACAGCGGTTTCTTGTGTCACAGTTTGTTAGTAGATTGCTGCAGTAGTCTGAAGATGTGCGTGTTAATtatgtctaaaaataaaagtgtctaTTTTGGCGGtctgataattatatttttatatttctattgctttttatatatattttttttttaaatatggacTGTACTAAATAATAAAGACTATCAAAGATCTGGCATTAACTCACACTAATAGAGCTCATTCCATGGCCTATAGTACCAGAGGCTTACATGGTAATTTCCTTTATGCTATCAGTGAGGTTTGTTATCAAGTCTTTAGTCAAGGCTTGTGACTCAGACAGAAGCTGAAGCAGACTTGGCAGCACAGACATCTTTCCCTCAATAAATctcttttaaaactatatttctgCTGCATGGCTGGccttattcttattttaactGATCAGCAGATATTGAACTTCCTTTACTCTGATATGTGGACAATATGACGATTAGAAGCACAATATAAAGGAAACTCTCTTCCCCAATTTCCTTGAAtggtgtatgtatatttgtgtttgtgtgtgtatgtatgtgtgt

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69510 True 641 lncRNA 0.33 1 29975629 29976269

Neighbor

gene id symbol gene type direction distance location
AMCG00009233 atp13a3,LOC106613657 coding downstream 19859 29930106 ~ 29955770 (-)
AMCG00009234 NA coding downstream 48171 29908609 ~ 29927458 (-)
AMCG00009232 NA coding downstream 269826 29705333 ~ 29705803 (-)
AMCG00009228 NA coding downstream 333717 29636991 ~ 29641912 (-)
AMCG00009230 NA coding downstream 387775 29573069 ~ 29587854 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding upstream 15307 29991576 ~ 29998483 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding upstream 153519 30129788 ~ 30138314 (-)
AMCG00009243 xxylt1,LOC107715806,LOC106573863,LOC107718247 coding upstream 186151 30162420 ~ 30171530 (-)
AMCG00009244 NA coding upstream 204812 30181081 ~ 30185651 (-)
AMCG00009240 NA coding upstream 260639 30236908 ~ 30244496 (-)
G55551 NA non-coding downstream 213464 29759527 ~ 29762165 (-)
G55488 NA non-coding downstream 516802 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 918388 29055713 ~ 29057241 (-)
G55359 NA non-coding downstream 1081746 28843473 ~ 28893883 (-)
G55333 NA non-coding downstream 1219996 28755298 ~ 28755633 (-)
G55648 NA non-coding upstream 259890 30236159 ~ 30236395 (-)
G55703 NA non-coding upstream 504510 30480779 ~ 30483373 (-)
G55722 NA non-coding upstream 514969 30491238 ~ 30491980 (-)
G55760 NA non-coding upstream 676643 30652912 ~ 30655021 (-)
G55861 NA non-coding upstream 833307 30809576 ~ 30816091 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 270700 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 912599 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 1585533 28385083 ~ 28390096 (-)
AMCG00009165 rpl35a,LOC106612432 other downstream 2357457 27613598 ~ 27618172 (-)
AMCG00009151 NA other downstream 2639898 27314317 ~ 27335731 (-)
AMCG00009235 NA other upstream 1668 29977937 ~ 29990810 (-)
AMCG00009241 NA other upstream 273602 30249871 ~ 30256499 (-)
AMCG00009265 NA other upstream 623205 30599474 ~ 30657612 (-)
G55878 NA other upstream 958295 30934564 ~ 30937251 (-)
G55881 NA other upstream 968098 30944367 ~ 30947211 (-)

Expression


Co-expression Network