G55620


Basic Information

Item Value
gene id G55620
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30142212 ~ 30222127 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69522
ttcttttaatGCTTTAGCTGAGAAACCTATCCCTGCTTTTTATAAACCACATACTGTATGAAAAGCAGCATTTAGGCATTTTTAGTGTATAagtgtatattttactttagaAATGTGGGGGAATGTTTGTGTTGCCACAGTTGTACATATTTGCACAAGGGAGAAGGTGTACATTATAAATAGAAATATGCTTgaactgtgaaaaataaaactattaaattcTGTTAGAAATGTCTGGTACTCTCttcatatatatgtttacacAACAGTCTCCAAAATAAACCAACCTAAACATGGAAGATGTTCCCCAGATCAcattttatctatttatgtaattaattatgaataaaacagCAAATCGATAACTCAGTAGAGGACAGACTGCTTTTATTACAGATTACATGTAAATCTAAAGATGTGTAAggcataataaaacataatttgaaataaagctATTTAAAATCTGATGACTTTGCTTTTTTCATATTAAAGGGTGAagct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69522 True 501 lncRNA 0.30 2 30142212 30222127

Neighbor

gene id symbol gene type direction distance location
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding upstream 132370 30008802 ~ 30009842 (+)
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding upstream 281843 29858925 ~ 29860369 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding upstream 399607 29717027 ~ 29742605 (+)
AMCG00009227 NA coding upstream 488875 29648617 ~ 29653337 (+)
AMCG00009222 tp63 coding upstream 569159 29563108 ~ 29573053 (+)
AMCG00009250 NA coding downstream 43126 30265253 ~ 30298128 (+)
AMCG00009246 dis3l2 coding downstream 90667 30312794 ~ 30327528 (+)
AMCG00009248 dis3l2 coding downstream 140925 30363052 ~ 30373668 (+)
AMCG00009249 NA coding downstream 166826 30388953 ~ 30404240 (+)
AMCG00009245 NA coding downstream 185743 30407870 ~ 30421424 (+)
G55597 NA non-coding upstream 143726 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 146342 29995563 ~ 29995870 (+)
G55595 lsg1 non-coding upstream 147571 29993622 ~ 29994641 (+)
G55586 NA non-coding upstream 165945 29975603 ~ 29976267 (+)
G55564 NA non-coding upstream 210060 29858295 ~ 29932152 (+)
G55649 NA non-coding downstream 14797 30236924 ~ 30242731 (+)
G55707 NA non-coding downstream 273416 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 377347 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 725239 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 933391 31155518 ~ 31163151 (+)
G55591 NA other upstream 146774 29995126 ~ 29995438 (+)
G55573 NA other upstream 230648 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 967481 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1033985 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1130444 28928892 ~ 29011768 (+)
G56060 NA other downstream 1939633 32161760 ~ 32165365 (+)
G56368 NA other downstream 3778669 34000796 ~ 34031445 (+)
G56369 NA other downstream 3793543 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 4141292 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 5166787 35388914 ~ 35389327 (+)

Expression


Co-expression Network