G55649


Basic Information

Item Value
gene id G55649
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30236924 ~ 30242731 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69565
ATTGGAAACTACCtgcaacatattttatttaaactgtcatACACATTAAGTTCTACTGCCAACATTAGTGgaaaatatttccctttttcttttgttcaagTCTGCACAAGATAAAAGGTTTACGCTACAACTTTTCCATAGCTTCCACAAAGCAACTTACTTCAGTCCAAGGGTGGTTCGATTTTGGTAACAGTGAGCCTCTAAACACCCCTGCTGAGCGCAATCAACATACAATATCACACAAAGGCAAACCGTTTCTAAACACCCAATAGTCATTTGGGTCCATTTAATCTTTCGTCCGTTACAATATGCTTAGCACATTTCTTATGGTAAAACTTTTGCATTTACAGcgaactaataaaaaaaaaaaggaaataaaaaaaaaatacataaggaaaCCACTTTTTACAAAAGgtaaaatgaaattatacaaATCGTCGCATGTACAATATGTACCTAAACCAACAGGTCATTTCACGTTGCGGGTGTGGGTTGTCGTCACATTCCATTTTACCCCTTTGAAAAATTAACAGAGATGAAGATGGGCACTCGGGACATCTCACACGAAGTTCTCTTCGGCTACAGGTTGAGGGGAGGCTGGGGTGCCcgtcacatttatatatatatattttataactgaCGCGTTCTGGAATGTCCAAAGGCTCTGTCAGCGCATAGAgaaaattaagatgaaaaacagagtccatttgaaaaaattATGGAGATTTAATCATCAAACTTGATCTTCTTTCCCTGGGGTTTTCCTCCAAAGCCACCACCTCCTCTACCTGAAATGGAAaaagtttaaacattaaaaaaataataattcagaccaatagtttgtacaaaataaattctTTAGCAATTCAAAATTTTGTTCCAACCTCCAGAAATGAATTCGTATAGCTGAAGGATGAGGTGGGGAAACGCAAGATTAACCCTCAGTACTTGGTCCTACCTCCGAAGCCTCCACGGTTGCCACCACGTCCTCCCCTGAAGCCACCGCCACCTCTGCCGAAACCACCGCGTCCTCCTCTGCCGCCACCACCTCTGCCTCCAAACCCTCCGAAGCCACCCCTGCCGCCACTCTGCCTATCACCCTTGGGCTTGGCGTAGTCCAGAGTCACCTTGTTGCCATCAATCTCACAGTCCTCCATGGCTTCTTTGGCAGCCTTGCAGTCTTGCTCGGAGTCGAAATCCACAAAACCGAATCTGAGgaggaaaaaattaaatcactaTTCAAAATTAGGCTTTCCCTGTAGTAAATGTGCTGGATGCAGACGGCAACATGCTTTTACAGCATAGTAGACCTCTACATCCTTGGCACTGTATGCCTGCCTGCACGGTTGTCCTTACACTCCATTAGAAAACAGGGAAATTGACTTTCACATATATAGAACATGCATGTAACTGGCATTTTAGCCAAATAGTGCTGAAGGATGTGTAATAGCATTCACAATACTGTCACAACAGACCTAAAGCATACTCCTAAGGCTGGAGACGCTTGGTGGTCAGATTGcggttgttttgtttacttctcGTGCGAATCCATACACTGTCACCAATCAGACAGAGAGGAGCTCATGAGAAGAGTTACTGAAGGGTCTTAAGCCTGAATAACATTCTGCTCATTCCATGCAAAAAAATACTAGTAGACTTAAGCATGAACAGTGCAAAGACAAGTTATTCATCCTGCAATAGAACCTGATTACAACTATAACCAAACTTAAAGCATTGGGAATCATACCCTTTAGAGGACCCAGTGTCCTTGTCTGTGACTATTCTGGCTGCAACGGCACCTTCAAACGAGTCTCTCAGAGTCTGGTCTGTGGTGTCCTCGGAAAGACCTCTGACAAACAGCGTCTTGGTTGGACCTGAAAGCACAGAAGAGCACACTTAAGTTCAAATGCCAATGCCTTGCACCACATTCCAACAGTGGTATTTTAAAAGCTTAGCAGGTATGAAAACCTCAAAGCAAGTTCACACAGAGGGAACAAACTAGTAGTCTCAAAACCAGTCAGCACTTACCCGAATTTCCTCTGCCACCATCCGATTTCTGTCCACCGGACTGGCTGTATTCTAGTCTGATTGACCTGCCTTCAATTTCTGTGTTGTTCAAGCTTTCAAGGGCATCCTTAGCATCCTCTGCAGTCTCAAACTCTACAAAAGCAAATcCCTTTTGGTCTGCCGTTGTTCTGTGGTATTCTGACAGAAATTGCTTTCTCAAATGCGCTTTGCAGAGCATCTTCTGTTGCACTGTAAGCCAGGTTATTCACTACAAGAGTCTTGCTCCCATTTGAGGCTGAGAAGGGgaggcaaaaaaagaaaaagtcagttGCTTTTCCCCCTCAACACTTTCCAACACCAGGACAGATTTAAGGACTAGATCAGTACTTGACTATCTAGACAGAAATTCAGCAGAGGTTAATCAGAGAGTTCAGTTCATTAATCATTTCTAGTCCAGGGGAAACTAACTTAATTCCCactgtttaataaatgttaGACATTATACAGAAAGATCAGTCtagtgcaaaaaaaataatcatcttCAGAATCAAGACAGACAAGAAAGCAGGAAGAAGCAGCTTTGAAGAACAAAATGGACATGAACTTAAATCTGTTTTAGTCCTTACCGGGAGGAGCTCTGGCCCCTTTCTGGCTCTTGTCTCCTGTGTAATCCAGGATAACTGAACGGCCCTGGACATCCACTCCCTGCTTCTCTTCAAGGACCTTTTCTGCAATGGCTTCAGTCTTGAACTCAAGGTAGGCAATTCTAATgcaacaaaaaggaaaaggttAGCTTTGAAATTTTAGTTTGTGTGTCAGTGGAgctgccaaaaaaataaatcaagatgcATACCCTCTGCTGGTGCCATCCCTGCCGGCTGGTATTCTGACATCGACTGCCTGATCGAACACTTCTTTCAGCTCGTCGATGGTCACAGAATATGGGAGGTTCTTCACAAACAGTGTGCGAACATCCCTCTCTTCTTGCTTTCCTGGGCATTCTCCTTGCTCTTTGCTTTGTCTAGTCTCACTTCTTGTCCAAGTAGCTTCTTTCCATTCAGTTCCAGAGCTTTTTGCAGGTCTTCTTCACTGGCAAAATCTACATAGCCAaatttcctaaaaaaaaa
>TU69568
ATTGGAAACTACCtgcaacatattttatttaaactgtcatACACATTAAGTTCTACTGCCAACATTAGTGgaaaatatttccctttttcttttgttcaagTCTGCACAAGATAAAAGGTTTACGCTACAACTTTTCCATAGCTTCCACAAAGCAACTTACTTCAGTCCAAGGGTGGTTCGATTTTGGTAACAGTGAGCCTCTAAACACCCCTGCTGAGCGCAATCAACATACAATATCACACAAAGGCAAACCGTTTCTAAACACCCAATAGTCATTTGGGTCCATTTAATCTTTCGTCCGTTACAATATGCTTAGCACATTTCTTATGGTAAAACTTTTGCATTTACAGcgaactaataaaaaaaaaaaggaaataaaaaaaaaatacataaggaaaCCACTTTTTACAAAAGgtaaaatgaaattatacaaATCGTCGCATGTACAATATGTACCTAAACCAACAGGTCATTTCACGTTGCGGGTGTGGGTTGTCGTCACATTCCATTTTACCCCTTTGAAAAATTAACAGAGATGAAGATGGGCACTCGGGACATCTCACACGAAGTTCTCTTCGGCTACAGGTTGAGGGGAGGCTGGGGTGCCcgtcacatttatatatatatattttataactgaCGCGTTCTGGAATGTCCAAAGGCTCTGTCAGCGCATAGAgaaaattaagatgaaaaacagagtccatttgaaaaaattATGGAGATTTAATCATCAAACTTGATCTTCTTTCCCTGGGGTTTTCCTCCAAAGCCACCACCTCCTCTACCTCCGAAGCCTCCACGGTTGCCACCACGTCCTCCCCTGAAGCCACCGCCACCTCTGCCGAAACCACCGCGTCCTCCTCTGCCGCCACCACCTCTGCCTCCAAACCCTCCGAAGCCACCCCTGCCGCCACTCTGCCTATCACCCTTGGGCTTGGCGTAGTCCAGAGTCACCTTGTTGCCATCAATCTCACAGTCCTCCATGGCTTCTTTGGCAGCCTTGCAGTCTTGCTCGGAGTCGAAATCCACAAAACCGAACCTTTAGAGGACCCAGTGTCCTTGTCTGTGACTATTCTGGCTGCAACGGCACCTTCAAACGAGTCTCTCAGAGTCTGGTCTGTGGTGTCCTCGGAAAGACCTCTGACAAACAGCGTCTTGGTTGACCCGAATTTCCTCTGCCACCATCCGATTTCTGTCCACCGGACTGGCTGTATTCTAGTCTGATTGACCTGCCTTCAATTTCTGTGTTGTTCAAGCTTTCAAGGGCATCCTTAGCATCCTCTGCAGTCTCAAACTCTACAAAAGCAAATcCCTTTTGGTCTGCCGTTGTTCTGTGGTATTCTGACAGAAATTGCTTTCTCAAATGCGCTTTGCAGAGCATCTTCTGTTGCACTGTAAGCCAGGTTATTCACTACAAGAGTCTTGCTCCCATTTGAGGCTGAGAAGGGgaggcaaaaaaagaaaaagtcagttGCTTTTCCCCCTCAACACTTTCCAACACCAGGACAGATTTAAGGACTAGATCAGTACTTGACTATCTAGACAGAAATTCAGCAGAGGTTAATCAGAGAGTTCAGTTCATTAATCATTTCTAGTCCAGGGGAAACTAACTTAATTCCCactgtttaataaatgttaGACATTATACAGAAAGATCAGTCtagtgcaaaaaaaataatcatcttCAGAATCAAGACAGACAAGAAAGCAGGAAGAAGCAGCTTTGAAGAACAAAATGGACATGAACTTAAATCTGTTTTAGTCCTTACCGGGAGGAGCTCTGGCCCCTTTCTGGCTCTTGTCTCCTGTGTAATCCAGGATAACTGAACGGCCCTGGACATCCACTCCCTGCTTCTCTTCAAGGACCTTTTCTGCAATGGCTTCAGTCTTGAACTCAAGGTAGGCAATTCTAATgcaacaaaaaggaaaaggttAGCTTTGAAATTTTAGTTTGTGTGTCAGTGGAgctgccaaaaaaataaatcaagatgcATACCCTCTGCTGGTGCCATCCCTGCCGGCTGGTATTCTGACATCGACTGCCTGATCGAACACTTCTTTCAGCTCGTCGATGGTCACAGAATATGGGAGGTTCTTCACAAACAGTGTGCGAACATCCCTCTCTTCTTGCTTTCCTGGGCATTCTCCTTGCTCTTTGCTTTGTCTAGTCTCACTTCTTGTCCAAGTAGCTTCTTTCCATTCAGTTCCAGAGCTTTTTGCAGGTCTTCTTCACTGGCAAAATCTACATAGCCAaatttcctaaaaaaaaa
>TU69569
TGCCAATCTGCTATCCAAGTTAAAACAATTTAAGCTAAAAATGTATAGCCATTAAACTGCTAAATACAtcttttatatttccatttacCCTTTTGGTCTGCCGTTGTTCTGTGGTATTCTGACAGAAATTGCTTTCTCAAATGCGCTTTGCAGAGCATCTTCTGTTGCACTGTAAGCCAGGTTATTCACTACAAGAGTCTTGCTCCCATTTGAGGCGGGAGGAGCTCTGGCCCCTTTCTGGCTCTTGTCTCCTGTGTAATCCAGGATAACTGAACGGCCCTGGACATCCACTCCCTGCTTCTCTTCAAGGACCTTTTCTGCAATGGCTTCAGTCTTGAACTCAAGGTAGGCAATTCCTCTGCTGGTGCCATCCCTGCCGGCTGGTATTCTGACATCGACTGCCTGATCGAACACTTCTTTCAGCTCGTCGATGGTCACAGAATATGGGAGGTTCTTCACAAACAGTGTGCGAACATCCCTCTCTTTCTTGCTTTCCTGGGCATTCTCCTTGCTCTTTGCTTTGTCTAGTCTCACTTCTTGTCCAAGTAGCTTCTTTCCATTCAGTTCCAGAGCTTTTTGCAGGTCTTCTTCACTGGCAAAATCTACATAGCCAaatttcTTGGAAGATCCAACTCTAATGTCCTGAACTTCAAGGTTTTtcttggagaagaaagtgtccAGAGCTTCTTTGAGTTCTTCAAAGTTCTTCTCACTGTTCAAATTGCCGACAAAAAGGGAAAAGCCTTCTTTCTCAGACTTTGGCTTCTTGGCTGCAGGAACCTCTTTCTTTTTAGGTTCAGGCTTCTTCCTCTTCCCAGCAGTCTCAGAAGattCATCTTCGTCACtgccatcctcctcctcttcatcatcctcatcatcgtcctcatcatcatcctcctcttcttcaGACTCCTCCTTGGCCTTCACCAGTCCTGCTTTCTTTCCCTTGGCAGCAGGTGCCGGAGTGGTGTCCATCTTTTCTTCTTCAGAGtCTTCTTCATCTtcgtcatcctcctcctcctcatccgaCTCTTCCTTCTTGGCTGGGGCTGCCTTTTTTGCGGGGGTCACTTTCACAGAGGCCTTCGCTGGAGTAGCCTTTTTTGGGGGAGGGGCTTCTTCCTCTGATTCCTCATCTGCAACACATTGCAGTCTCACCGTCACGCGATTCATTTGAACGTAAGGAACTATTCTGcagaaaatgctttgaaaagtATTCGGAAGCATTCTGGTTATGCGTAGGGAACAGAGTCCAGCACAATGGTGGAGGCCTACAAAATGTGTTGATCCCCAAAATATTCCAAGACTTCATTCAAACACTGGAAGTGGTTAATGTAATCCTGAAATTAATATTGGGGAACAAGTTATATCTGTATGCAAATATAACTATTATAAACAAGTACAGAGCAGCATAAGCAGAAACTGAAGTATGAGAAGTGCACCTACCACCGACTccaaataactaaatgtatgtttttctccTCAACCAGAACCATTGATCTTACCATCTTCCTCATCGTCatcttcctcatcctcctcctctgacTCCTCTTTCTTTGCTGGTGTGGCTTTTTTCGGGGGTGCAGCTTTTCCCTTGGCAGGAGTGGCCTTGCCTTTCTTAGGTGGTGGAACCTCAGCTTCTTCCTCTGAAAGAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69565 True 3134 lncRNA 0.42 3 30236924 30240492
TU69568 False 2273 lncRNA 0.44 6 30236924 30240492
TU69569 False 1656 lncRNA 0.45 8 30239333 30242731

Neighbor

gene id symbol gene type direction distance location
AMCG00009239 NA coding upstream 13447 30218869 ~ 30223477 (+)
AMCG00009238 NA coding upstream 28195 30186900 ~ 30208729 (+)
AMCG00009237 fam43a,LOC106573864,LOC102785697 coding upstream 227082 30008802 ~ 30009842 (+)
AMCG00009231 her6,hes1,LOC107711114,LOC107680502,LOC107582845,LOC107722674,LOC107685314 coding upstream 376555 29858925 ~ 29860369 (+)
AMCG00009226 opa1,LOC107585173,LOC107722677,LOC107711112,LOC107582739 coding upstream 494319 29717027 ~ 29742605 (+)
AMCG00009250 NA coding downstream 22522 30265253 ~ 30298128 (+)
AMCG00009246 dis3l2 coding downstream 70063 30312794 ~ 30327528 (+)
AMCG00009248 dis3l2 coding downstream 120321 30363052 ~ 30373668 (+)
AMCG00009249 NA coding downstream 146222 30388953 ~ 30404240 (+)
AMCG00009245 NA coding downstream 165139 30407870 ~ 30421424 (+)
G55620 NA non-coding upstream 14797 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 238438 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 241054 29995563 ~ 29995870 (+)
G55595 lsg1 non-coding upstream 242283 29993622 ~ 29994641 (+)
G55586 NA non-coding upstream 260657 29975603 ~ 29976267 (+)
G55707 NA non-coding downstream 252812 30495543 ~ 30497604 (+)
G55745 NA non-coding downstream 356743 30599474 ~ 30602032 (+)
G55800 NA non-coding downstream 704635 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 912787 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 1299890 31542621 ~ 31547232 (+)
G55591 NA other upstream 241486 29995126 ~ 29995438 (+)
G55573 NA other upstream 325360 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1062193 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1128697 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1225156 28928892 ~ 29011768 (+)
G56060 NA other downstream 1919029 32161760 ~ 32165365 (+)
G56368 NA other downstream 3758065 34000796 ~ 34031445 (+)
G56369 NA other downstream 3772939 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 4120688 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 5146183 35388914 ~ 35389327 (+)

Expression


Co-expression Network