G55703


Basic Information

Item Value
gene id G55703
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30480779 ~ 30483373 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69634
AAAGATGGTTTTATTGACTCCAGTACCACTTTATTGATCATTGTTTTCTTAGGTGTATATTCCtaattatgtacagtatttacagGATTTACATCCCACAGCTGCGTGGGGAAAGACACTGCCATTTTCCACACATACATTTGGAAGTCTGCATCTATTATCCTATAACAcctataaaaaaatgaattctgcattcattatatttgaattataaatatgtttgtaaaatGGCCATTCAAATATTGGGCTTTTAACTGAAAAAGCCCTATTACTCCTTGCACAACCATTAGCAGATATATGTCATCCACACTACACTGCCCAAGTAGATGTTGAACTGATCTGATACTGTAGGATCTGGCCCACTTAGAAGCAACAGTTTGATAATTGTCTTTGTACTACTTAACTCTCAAAGCCTGCCTACGCCATAGCGGTTCACCTGCAGGATTTAATCTGAATTTCTCAGTTTAACTATATAAATCCTGGGGCTACATTATGTAAAGCACCACAAAAGGTATAaaccagtttccttccattgctTGTCTCACAAcatgtctttaaaaacattcatttgTATGCTTTCACACTCGTTTGGAGTGAGCAGTCTCCAGCTCTCCACCTACATAACAAATACTGCAATACTGGATAATTACGAGGCAGTAGAAACGGTCATTTTAGTTTCCCCCCCTAGTTCCCTCAAACAAAATGTCAGAATAATAACATGAACATTAGAATGATGCTCTGCTGTACACTAACTGGTACACCTATAAAGAGCTCTTCCTTCACTGAAGAAGGTAGCTCTGCATACCTGATTTGCTAGTATGTACACATCATACAAAGATGCCCCCAATGTTATATAAATGGGTGCTTCGAAGGGATACAGCGAAGTGTTGTTGGCCCACAGCAGTACGAAGCACATGGGCTATTTAATCACCTAGACCTTGCACTGAATATACATGGATGATAATAAATTGTACATCTCAACAGTAACACATCAAATACcttggtaattttttttttttttttaacaaaccatTTACAAAGCATAAAAAGATTTATATtctcaaaaattaaaaaaacaaagaaagaaaacaactgaaactcaaaatcGTATGTCTTCcaatttttctgttttgtcacATGTAAAGCTAAGTAAACAATGTACTTTGCTTACTTCAGTATATGTTAAACCGCAAGATTATGACAAACCCCAGGTGTGTtggtgtatataaatattaacattacagGAAATCATCAGCTTTTGGGATGTCTGCATTCTCAGATAAGGTAACTCTGCACAGACCCAGACATCTTAGTCTtattctttttggttttgtttacagGGAACATATTTTTCAAGTACACCAGGGCTCGGTactattaaaaatgcttttactAATAAGGATTTAAGCCCtttggaatgtattttaatatcagAAGTGTTTCCCGCTGAAGTGACTGATCTGTAATACTCACTCACTGCCTTTGCCCGCCACTCAATCAATTTACACAAAATGTTCGTTGTCGTTGTCACTGGACTCTTGGGCCAGGGGGTGTTGCCTCTGAATTCTGTTATGTTATTAGTACCCTTTGTTTTAGAATCTGGAAAAGGCCTGTGGAAAACTCATTAACATGCTATAAAAAGATGATACACAACTTGATCGTATACATGCACaactacatgtatttatatacagtgacttgaaatatttataaaataattttacttcTACACCATTGCATAACAAAAACTAACTTATTTTGGATATTGAGATAATATTGCTAGCAAATATACTTTCTAGGTGATGCATAAATAAAGCTGGTCATATATGGTCAGTTTTGTATAGATCCAGGCACGTGCACAGTTTCTGGAGGGCAGGGACAACACTCCAAAAACGGGGCACAGCTGGTGACCAGTCGACTGGGGGAATGGTCGGCCGGGGAGGCACTGCAGCAGGGCACTTTCCGTGTGTAAGGGCAATAGGGCAGGGGTCGTCACCCCTTTCAATCCCCCCAGTGTATACGTGCCTAGATATATTTGACCAAATTCATTTTGATTattgggattaaCAGTCTCAGAATTGTTTATTCTAAGCTGTAAACTCACAGGCCAAAGATCCTAGGGGATTTCAGTCTTAGCCGAAACTGTACATTGTTAGTTCCGGAACTCCTTGCTATCCCAGAATGCATCACGCTTTGAAGATGTAAAAAAGGGAGAGTTGATTATCTTGTTTAGATAGAGGATCTTTGCACAGGCTCTACTGTAAGACCTATATAGGTACAGGTCACAACATTACTCGCTGCATGCTGGACCTTGCCCTTTGCTTGCAGGGTATATTCCCAGCCACCTGGCACAGTGACAGGCACTCCCACACCCTGCTCTCACAGCCTCTGGGAGTCATACTGCTGGAACCGGTTGAGCTTGTCAGGATCATTGGATGCCATTTGAGAAAAATCTCGGAAAATGTCTTGGTAGGTTTCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69634 True 2482 lncRNA 0.39 2 30480779 30483373

Neighbor

gene id symbol gene type direction distance location
AMCG00009240 NA coding downstream 236283 30236908 ~ 30244496 (-)
AMCG00009244 NA coding downstream 295128 30181081 ~ 30185651 (-)
AMCG00009243 xxylt1,LOC107715806,LOC106573863,LOC107718247 coding downstream 309249 30162420 ~ 30171530 (-)
AMCG00009242 xxylt1,LOC106573863,LOC107718247 coding downstream 342465 30129788 ~ 30138314 (-)
AMCG00009236 lsg1,LOC107573872,LOC107715771 coding downstream 482296 29991576 ~ 29998483 (-)
AMCG00009255 psmd1 coding upstream 10287 30493660 ~ 30515776 (-)
AMCG00009254 psmd1 coding upstream 53477 30536850 ~ 30542295 (-)
AMCG00009253 NA coding upstream 60780 30544153 ~ 30547821 (-)
AMCG00009262 eif2b5 coding upstream 78375 30561748 ~ 30567694 (-)
AMCG00009268 NA coding upstream 168274 30651647 ~ 30652128 (-)
G55648 NA non-coding downstream 244384 30236159 ~ 30236395 (-)
G55610 NA non-coding downstream 504510 29975629 ~ 29976269 (-)
G55551 NA non-coding downstream 718614 29759527 ~ 29762165 (-)
G55488 NA non-coding downstream 1021952 29458615 ~ 29458827 (-)
G55404 NA non-coding downstream 1423538 29055713 ~ 29057241 (-)
G55722 NA non-coding upstream 7865 30491238 ~ 30491980 (-)
G55760 NA non-coding upstream 169539 30652912 ~ 30655021 (-)
G55861 NA non-coding upstream 326203 30809576 ~ 30816091 (-)
G55975 NA non-coding upstream 1431795 31915168 ~ 31915373 (-)
G55991 NA non-coding upstream 1467049 31950422 ~ 31950673 (-)
AMCG00009241 NA other downstream 224280 30249871 ~ 30256499 (-)
AMCG00009235 NA other downstream 489969 29977937 ~ 29990810 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 775850 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 1417749 29057941 ~ 29063030 (-)
AMCG00009186 LOC101485254,LOC105936810,LOC108230674,LOC100697045,LOC107392689 other downstream 2090683 28385083 ~ 28390096 (-)
AMCG00009265 NA other upstream 116101 30599474 ~ 30657612 (-)
G55878 NA other upstream 451191 30934564 ~ 30937251 (-)
G55881 NA other upstream 460994 30944367 ~ 30947211 (-)
AMCG00009269 NA other upstream 489580 30972953 ~ 30985995 (-)
AMCG00009275 NA other upstream 667539 31150912 ~ 31184966 (-)

Expression


Co-expression Network