G55745


Basic Information

Item Value
gene id G55745
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30599474 ~ 30602032 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69678
TAAAAgaactgtcactgtcactgcagcTCCTTGAGTAACATTGTCTGCAGCTACAGCAATAACCCCTAAAGTATAATTGCTCCCGGGTACAAGTCCAGTTATTTCAGTTGACAACGTGTTCATTCCAAGACTCTTAACAGTCACTCCATTGGCTTCAACTCTGTACCCCCCTGCATTTCCAGATGGTGCAATCCAGCTAAGGCCTATTGATGTTGTGCTAATGTTGCTGGTACTCAGATTGGTAACCACTTCAGGGT
>TU69680
ATTCAATTCTTAAAGGTGTTTTTCCAAGTATTTCATACAACTTACTAGTGAACACAACTATTGTCACTGGAGTTCCTTGAGAAACATTATCTGCTGCCACAGCAATGACCCCTAGAGTATAATTGCTCCCGGATACAAGTCCAGATATTTCAGTTGACAACGTGTTCATTCCAAGACTCTTAACAGTCACTCCATTGGCTTCAACTCTGTACCCCCCTGCATTTCCAGATGGTGCACTCCAGCTAAGAGCTATGGATGTTGTGCTGATGTTGATGGTAATCAGATTGGTAACCACTTCAGGGTCTGGAGAAGACAGTGGGATGAGCCAGAAATAATCTTCCAAATAGACTTCACAGTGTATTTATCAACATATTATATGATTTGAGTTCGACAATATGAAATCATATACCAAGCTGAGGCTCACTGACTtggaaattgaaattatttgtgtatgtgagAAGAATGATTATAGAGCAGTGATTTCCAGATTCATTCATATTGATACAATACATGAAACAATGATTTACCTGCTGTcaatgcaacatttatttatctgtaaaAAACGAATAAAACTAATGAAATTGCAACTCTAGGCAATAAACTTCAAATGGTAAAAACCTAATTTAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69678 False 257 lncRNA 0.45 2 30599474 30600234
TU69680 True 627 lncRNA 0.36 2 30599932 30602032

Neighbor

gene id symbol gene type direction distance location
AMCG00009252 NA coding upstream 41182 30552556 ~ 30558292 (+)
AMCG00009251 NA coding upstream 68982 30517226 ~ 30530492 (+)
AMCG00009247 NA coding upstream 116093 30446676 ~ 30483381 (+)
AMCG00009245 NA coding upstream 178050 30407870 ~ 30421424 (+)
AMCG00009249 NA coding upstream 195234 30388953 ~ 30404240 (+)
AMCG00009257 NA coding downstream 14862 30616894 ~ 30642141 (+)
AMCG00009256 NA coding downstream 40174 30642206 ~ 30774490 (+)
AMCG00009264 NA coding downstream 236861 30838893 ~ 30846488 (+)
AMCG00009260 NA coding downstream 263459 30865491 ~ 30877032 (+)
AMCG00009259 LOC103373082 coding downstream 326142 30928174 ~ 30935918 (+)
G55707 NA non-coding upstream 101870 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 356743 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 377347 30142212 ~ 30222127 (+)
G55597 NA non-coding upstream 600988 29998229 ~ 29998486 (+)
G55596 NA non-coding upstream 603604 29995563 ~ 29995870 (+)
G55800 NA non-coding downstream 345334 30947366 ~ 30950209 (+)
G55807 NA non-coding downstream 553486 31155518 ~ 31163151 (+)
G55926 NA non-coding downstream 940589 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 946499 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 1451755 32053787 ~ 32057482 (+)
G55591 NA other upstream 604036 29995126 ~ 29995438 (+)
G55573 NA other upstream 687910 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1424743 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 1491247 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 1587706 28928892 ~ 29011768 (+)
G56060 NA other downstream 1559728 32161760 ~ 32165365 (+)
G56368 NA other downstream 3398764 34000796 ~ 34031445 (+)
G56369 NA other downstream 3413638 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3761387 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4786882 35388914 ~ 35389327 (+)

Expression


Co-expression Network