G55807


Basic Information

Item Value
gene id G55807
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 31155518 ~ 31163151 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69761
ttcttgttttattcagatGTTTGGCACAAAATGTGGCTCATaattcaatttctttttttatttcaacattttgatCGGAGGTAAAAACTGTTAATAACTAGATAGGCAGGTAGACAATACATGGATAAGAAAAGAACAAACGGGTTGAAcagtttcattgttttgttgtgtttaaatcACAAACTAGAAGTCCTTAGTCTGTTACACAGTTGAATAAACCCAGTGAAGGATAAGTACAATTCAGTATAAAGCCACACCTCTAGAGTCTTGGCAAATATGAAGACCATGTCAGTTTGTATTGTGAGATCTGCAGAATATGAGTTTCTCTGGGAGAACTATGAGCACAAGCTTCCTCCATAGATTTGCATGTCTCTTCAGAGACGGCTGGGAACATTCTGTCCAATGAGAAACCTTGTTACTGCGGGACCTTCTTGAAGATTTGTTTGCACTTCACACCACAGGCCCTAATTCCAAATGCATTTCGTCTCCTTCCACCCATTGAGTCCATCCTCTCCCTTCCTTCTCTCCATTCTGAACGCAGACTAGCTTGTCTCCATCCCAGGTCACAGTGGTCTGCATTTGCGATCATCCACCCCGGTCAAATCCTCCTCAAACTCCTTCCCGATTTCGAAATCCATGTTGTAATTTTTGAAAGTGCTGAGCGTTTTAATGACCATGTGATCCCCATTCTGAATGATGTCTTTATCAGGTTTCAACAAGCCTGCAATTTTCCTTATTGCGACGTTCACATCAGTGCTTTCAAGTACTCTTCGAAGTTTTCATTGCTGATCATTTTCCAATATCCATTAAAATCTGTAGACATTTTGCTCCGAGTTGAGATCCGGTTTCTTTCCTGCTCAGTTTTCAGTTCACCTGTAAATGCGAGGATCTCTTTCAACAAGCCCGGCTTCAAAAGACCCTTTATTTGCCCAGACCTATTAATCGGATTACATTATTGCTCCGGCGTTACTGTTGCACCCcccatttcctttaaaaagacGCACAACTTTGTTCTTG

Function

GO:

id name namespace
GO:0097458 obsolete neuron part cellular_component
GO:0001917 photoreceptor inner segment cellular_component

KEGG:

id description
ko04744 Phototransduction

RNA

RNA id representative length rna type GC content exon number start site end site
TU69761 True 1017 lncRNA 0.41 4 31155518 31163151

Neighbor

gene id symbol gene type direction distance location
AMCG00009273 NA coding upstream 18948 31131150 ~ 31136570 (+)
AMCG00009258 NA coding upstream 208233 30944371 ~ 30947285 (+)
AMCG00009259 LOC103373082 coding upstream 219600 30928174 ~ 30935918 (+)
AMCG00009260 NA coding upstream 278486 30865491 ~ 30877032 (+)
AMCG00009264 NA coding upstream 309030 30838893 ~ 30846488 (+)
AMCG00009277 clstn2,LOC107561803,LOC107738117,LOC105912785,LOC107694660 coding downstream 191966 31355117 ~ 31370777 (+)
AMCG00009278 NA coding downstream 231728 31394879 ~ 31412124 (+)
AMCG00009276 NA coding downstream 256689 31419840 ~ 31424011 (+)
AMCG00009281 NA coding downstream 429897 31593048 ~ 31604365 (+)
AMCG00009283 NA coding downstream 757536 31920687 ~ 31940691 (+)
G55800 NA non-coding upstream 205309 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 553486 30599474 ~ 30602032 (+)
G55707 NA non-coding upstream 657914 30495543 ~ 30497604 (+)
G55649 NA non-coding upstream 912787 30236924 ~ 30242731 (+)
G55620 NA non-coding upstream 933391 30142212 ~ 30222127 (+)
G55926 NA non-coding downstream 379470 31542621 ~ 31547232 (+)
G55929 NA non-coding downstream 385380 31548531 ~ 31552162 (+)
G56021 NA non-coding downstream 890636 32053787 ~ 32057482 (+)
G56062 NA non-coding downstream 1003714 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 1011156 32174307 ~ 32179259 (+)
G55591 NA other upstream 1160080 29995126 ~ 29995438 (+)
G55573 NA other upstream 1243954 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 1980787 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2047291 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 2143750 28928892 ~ 29011768 (+)
G56060 NA other downstream 998609 32161760 ~ 32165365 (+)
G56368 NA other downstream 2837645 34000796 ~ 34031445 (+)
G56369 NA other downstream 2852519 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 3200268 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 4225763 35388914 ~ 35389327 (+)

Expression


Co-expression Network