G55878


Basic Information

Item Value
gene id G55878
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30934564 ~ 30937251 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69850
AATACTTAGAGTTGCTCACAATCTATTCCTGgttaacacaaaaacacatacattatataaatatattacttgaCAGTGTATTTGAGGATTAGTGGCTATTGTTACAATTGATGGACATATTGCAAGTGTATACAATGTTTTGGTGTTCCGGTAGATTTATTGCAGTGTTGTCACAGGAAATTTGTTAAGAACCCTCGCTGGAGAGGataatatgtgtttattataatgcattttatttatttgttaacaagacaagatatatagatatatgttaGATACAAAGGTGGTACTTTGTGGGTGGAAAATAACATATCTTTAATTGATTGAACACAAGGTAGAATACATTCTAAAGTCTCATAACATGGACAGAAGGCATTACATTGAATGCATGATGCACGAATACAAGGTAGCCCAACTTTACAGACCGTACGTATTAGACAGTGATTATAACACACATGGAACATTGAAAATAGGCCAATCTTATGACACTGATCCAACACGGAACACttggttttatgtatttttaaatcaaaaaggcaaacatgaatacatattgtACACAAGACTAATGTGCTAACGGTCATTTCACGTGTGCGTATCATACACCTTTTTTCGTCCTAATAGAACCCTGCTACCAATAATTGAACATTTACATCTAATATTAAACTTTTCATTTATCCTCCCTTCACTGAAGGTAGAAGTACATGACtaactgattttattacaaaacacaaatgcatattcCTTTAAGGAATATGgagaaatcaaaatatacaacTAAAAACACATTCTCTATATACATAATTATCTTGGGAATATTGAGTTTTATAAAACGCTAATTTTAAGTTTGTGGACATCCGTAGTTAGTTGAAATACTTCACGCATTACCAGATAGctggtaattaaaacaaaataaaatgaaaagagctTTTCTGCGATGTCCATACGAAACAAAcagatatttacaaaacagaTACTCTCGACTCTAAGAGAAGAGGGTCTAAGACGACTGGGTGTCAGTGGCAGGCAGGCAGTCATTCCAGGAGCAGTGCCATACAGGATGcgtttgtgtagcgcagatttcctcAGTTCTGCGCAGAgatgcgctgctccaccaatgggatccgtggaattctgcagaactGCGCAAATCTGGGCTACAACAACGCGACCACAGATTttaggatttcattttttttcctcccatcACGGGTACACCATTCCGAGAACATCAGGTTACTCTTCGCGGACCTTGAAATACATAGTAGGTAGATTTTATTTCTTACAtaacattacttttaaaaaaagaaaattgtaggTATGGATAAGAGTTCTACCAAGGTCTCCACATCGATTTTGAATAGGTAGTTGTGGGCATATTCTGAACCCCAGAGTTTTCCACCGTTTCTGGTGAAATCTGACTCTGCTCGTTGTCAGTCTCGTCTAGATCAGAACAGATGTCCTCGCTTGAGGTCGTGGATGGGGCCGGAGAGAGGGCTGAAGAAGCCCCGGACAAACTCGTCCCCCCGGGGGAAGCCAGTGAGGGGCTCATCCCATCACTGTTAAGCCAAGTGCTGTTGTTGCTGGAAGAGTCCGACATTAAATCCACGAGCATATCCTGAAAATGGTCCTCATTCAAAGGCATAGATTCCAAAAGGTGGTTCAATAACTCCGCGGCCACTGTAGCATCAATCCCCGGGCAATTCGACACAAACATGTGGACTTCGTGCATGCACTGGATGTACCCCGCTGCAAACCTCTCGCTCGCCTCCCGGTTTATAGTGTCAGCCTCCATGGCTCGGTTCCGCAGGATATTTTCAACTCGCTTCACAGTCATCTCTAACACTTCAGCATTCTCCATTTTCGTCTGGAGATCCGAGTCTGCCAAGAGCCCTCTAAGCTCCTGCAAACTTTCATTGATGCGGGCACGTCTCTTCTTCTCAACCAGGGGTTTCCTTGCCTTTCGGTCTCCTTTAATCCCATAGTATTCCTCCTCATCCCTGCTAGATCCATTTTTACTGGCTCGAGATGAGGGGGCCATGTTGGTTCCAACCCAAGAATAGGAGAAAACGGTGTAATCCACAAGTACGGTACGATCCTTGAGAGGGGCAGCTGGCAGGCGGACGCAGTCCCAGAAATCAGTACTGTAGACGCAAACAAGCTGGGTTTTATTGTGTAACCTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69850 True 2183 TUCP 0.41 4 30934564 30937251

Neighbor

gene id symbol gene type direction distance location
AMCG00009263 cab39 coding downstream 16942 30906868 ~ 30917622 (-)
AMCG00009261 itm2c,LOC102237697,LOC105920507,LOC104919396 coding downstream 28800 30895975 ~ 30905764 (-)
AMCG00009267 NA coding downstream 130934 30801745 ~ 30803630 (-)
AMCG00009266 NA coding downstream 237969 30693699 ~ 30696595 (-)
AMCG00009268 NA coding downstream 282436 30651647 ~ 30652128 (-)
AMCG00009270 NA coding upstream 10047 30947298 ~ 30970858 (-)
AMCG00009271 pik3cb,LOC106581359,LOC106613172 coding upstream 49873 30987124 ~ 31019808 (-)
AMCG00009272 foxl2,LOC101448029,LOC100136214,LOC106613173 coding upstream 129279 31066530 ~ 31067024 (-)
AMCG00009274 copb2,LOC106599054,LOC105021140 coding upstream 199318 31136569 ~ 31148800 (-)
AMCG00009280 spsb4,spsb4a,LOC108267127,LOC103021520,LOC108440634,LOC107743001 coding upstream 536502 31473753 ~ 31477141 (-)
G55861 NA non-coding downstream 118473 30809576 ~ 30816091 (-)
G55760 NA non-coding downstream 279543 30652912 ~ 30655021 (-)
G55722 NA non-coding downstream 442584 30491238 ~ 30491980 (-)
G55703 NA non-coding downstream 451191 30480779 ~ 30483373 (-)
G55648 NA non-coding downstream 698169 30236159 ~ 30236395 (-)
G55975 NA non-coding upstream 977917 31915168 ~ 31915373 (-)
G55991 NA non-coding upstream 1013171 31950422 ~ 31950673 (-)
G56012 NA non-coding upstream 1060826 31998077 ~ 32031970 (-)
G56163 NA non-coding upstream 1863284 32800535 ~ 32800895 (-)
G56185 NA non-coding upstream 1906844 32844095 ~ 32844336 (-)
AMCG00009265 NA other downstream 276952 30599474 ~ 30657612 (-)
AMCG00009241 NA other downstream 678065 30249871 ~ 30256499 (-)
AMCG00009235 NA other downstream 943754 29977937 ~ 29990810 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 1229635 29660960 ~ 29704929 (-)
AMCG00009215 gpr17 other downstream 1871534 29057941 ~ 29063030 (-)
G55881 NA other upstream 7116 30944367 ~ 30947211 (-)
AMCG00009269 NA other upstream 35702 30972953 ~ 30985995 (-)
AMCG00009275 NA other upstream 213661 31150912 ~ 31184966 (-)
AMCG00009332 NA other upstream 3070352 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 3104825 34042076 ~ 34050737 (-)

Expression


Co-expression Network