G55881


Basic Information

Item Value
gene id G55881
gene name NA
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 30944367 ~ 30947211 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU69860
TTTTTTTACTAGTCTTTTCATAAAGGTATTTGAATACACATTACTGAAACATACCACATCAGCAGAAAAAGCAAAGACTATCACAAAATGCAAAGTCTAcatcaaaataagtaaaatggtTCTGaatcaaatcaaagacaaatgtaTGCTTTCTAAGGTTACTGTATCATGTATCAAAAGTGACAGGACTTGAGATGGGTGTAATGTAGAAAATCTGGCCATCATGGTAACATTTGTTAGTGATTCAATTCACTGTTGGATGCAGAATACATTACAACTCAAATACTCAAAACACCTCTCTGAAGTAGGTTTTAATGCTGAAACATCATTAGCCAATGCTAGTGAGCTTATATTAGCCACTTACAAATGAGCACAAAAGATAATGTACAATGATTGTGCAATCTTTTACAGGGtacaaattaacaattttaacaatatattaattttatatgtacaatatatcGTGGTATATATATCAACTTTGGTGGGTTGGACCCGATATTGGGGATCTCAGGCATGGACTTGGGAGACACAAAGGCAGGTTATGgtgcaaataaatgcatttcttataTACAGTGCACCATgctcaaaatacacaaattccaaaacaaaaccctagctcaTCTCAAGCCTAAACTACAGACGTTGAAACAGTTCTCCGAGCTACACATAACTAGGCAAAACATGAACACGAAAGACAAACTTACAAAAGGATACCATACAAAGTCTGTGATCCGTTGTCGTAGAAGTAATGCAAAGCCAAAGTCATGACCTGTggtaataaaatactgttttaatgaagctgcagggggaaaaaaagtttttttgtgTTCCAAACAAGATTGTCCAGTTTTGTGCAAAATTGATTAAACTTAATGGACTTGTACATCTTGCAATATATTTCAATGATAATTTGAAATTCAGTTACTTGTAAATGCAGTCTCCCAACACGTCTGTTCTTCTATCACCATCTCCTGGTCCCAGTTAGGAGCACCAATCCTTCAGGTTTTATAGGTATCATTGATCAGTTAATCTAATTTCACCAAATAATTGGTTCAATGAATTAACATTATTAGCAATGTACCTGTTGGGATCGCTGTCCACCGAGTCTTCAGCCCCCTCCTTTAAGGTCTATAGCTTCTCTGAGTCGTCATCATCCCAGCTGCAGGACTCTGCACAGTCCTCCACAGGGAACTCCACCTCTATGTCATACATGAAATCAGGATCATCCTTCTTTTTGCGGTTCCGTTCAAAGAGCTCGTCCATCTTGGCCTTCTTCCGGGCCAGCTCCTCGTCACTGAGCTTGTTCAGGTCCTCGTTGGGGTCCAGGTCCAGGGAGGCCAGGCTCTGCTCCAGGCTGCGGCCCAGCAGTCTGTCTCGCAAGATCACATGGAGCCTCTCGAGCTGCTTCATGGACACAGACTGCAGGTAGGCGCTGTGCCGCACAGTGTTCTTCAGGCGCTCTGCCGCCTTGCTGCAGTCTGCAAAGTTAAAAGTGGAAATGATGAGCTTGGCTAGTCTTGACATGCTGGACATAGAACTTATAGTAATTCCTGGGAATGCTGTCACTTGATAGGGGTCTAATTTCAAAGacaatgcacacatttacaTCAACTGAAAGTGGCCATTTTGTCACAGCTACCAGAATGACTTGGTTTATCCTAAAAGAGAGAAGACTAACAATGTAGTCGGAATAGAATTAATTTTACTTCCATGCATTACTTACACAATTAATACCTGTCTATGTGTGTATACTTACCATTTACACTAATGCCAATATAAAGTGCTGTCACATAATAAAGGCCTTAAGTGAGGACAGAAATGTGCCTCTTAAGCACCTTCCATGAAATACCACTAAGTATACATCTAGTTATCCAAATTATGTCCACAATGCACTTAATGGAATTAATGTTGTTAACTTAAATAACTGCCTGTTGCTGTAAAACTACAGCATGGGTTAATTAATGCTTTGTCCGGTAGGTGGCACTAAAACCCCATTCTTACTGGCCGTAAATGAACACCCCAGACAGAATATATGCAATATAAAGCACTAGATTCAGCACTGCACAGGTCTGCCAATACACCTGAAAACTTGGAGAAGTTCCGCACAGGCATCACACGCTTCCTCGTCTTTTTCGTCGCTTCGTTCTCATAAATTAAGACGATGGCTGGGGGGTTGAACCTCACTCCAACCTGCGTAGCCACGGACGACATTGGTTTTGTTACGGATTTCCGTCTACTTCATCTCATCTATTTTTCTTGGCTGGTTAACCGTCTCTGAACACGCTTAACGTTGCTACGAATAAACACTATGGCCCTGAGGACTTAAACGGCCAGTGATCTGCCAATATTAATTTTGgattaattatgatttatatgCGCGTATTTTCACATTATTGTCCTGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU69860 True 2406 TUCP 0.40 2 30944367 30947211

Neighbor

gene id symbol gene type direction distance location
AMCG00009263 cab39 coding downstream 26745 30906868 ~ 30917622 (-)
AMCG00009261 itm2c,LOC102237697,LOC105920507,LOC104919396 coding downstream 38603 30895975 ~ 30905764 (-)
AMCG00009267 NA coding downstream 140737 30801745 ~ 30803630 (-)
AMCG00009266 NA coding downstream 247772 30693699 ~ 30696595 (-)
AMCG00009268 NA coding downstream 292239 30651647 ~ 30652128 (-)
AMCG00009270 NA coding upstream 87 30947298 ~ 30970858 (-)
AMCG00009271 pik3cb,LOC106581359,LOC106613172 coding upstream 39913 30987124 ~ 31019808 (-)
AMCG00009272 foxl2,LOC101448029,LOC100136214,LOC106613173 coding upstream 119319 31066530 ~ 31067024 (-)
AMCG00009274 copb2,LOC106599054,LOC105021140 coding upstream 189358 31136569 ~ 31148800 (-)
AMCG00009280 spsb4,spsb4a,LOC108267127,LOC103021520,LOC108440634,LOC107743001 coding upstream 526542 31473753 ~ 31477141 (-)
G55861 NA non-coding downstream 128276 30809576 ~ 30816091 (-)
G55760 NA non-coding downstream 289346 30652912 ~ 30655021 (-)
G55722 NA non-coding downstream 452387 30491238 ~ 30491980 (-)
G55703 NA non-coding downstream 460994 30480779 ~ 30483373 (-)
G55648 NA non-coding downstream 707972 30236159 ~ 30236395 (-)
G55975 NA non-coding upstream 967957 31915168 ~ 31915373 (-)
G55991 NA non-coding upstream 1003211 31950422 ~ 31950673 (-)
G56012 NA non-coding upstream 1050866 31998077 ~ 32031970 (-)
G56163 NA non-coding upstream 1853324 32800535 ~ 32800895 (-)
G56185 NA non-coding upstream 1896884 32844095 ~ 32844336 (-)
G55878 NA other downstream 7116 30934564 ~ 30937251 (-)
AMCG00009265 NA other downstream 286755 30599474 ~ 30657612 (-)
AMCG00009241 NA other downstream 687868 30249871 ~ 30256499 (-)
AMCG00009235 NA other downstream 953557 29977937 ~ 29990810 (-)
AMCG00009229 ccd50,LOC106613514 other downstream 1239438 29660960 ~ 29704929 (-)
AMCG00009269 NA other upstream 25742 30972953 ~ 30985995 (-)
AMCG00009275 NA other upstream 203701 31150912 ~ 31184966 (-)
AMCG00009332 NA other upstream 3060392 34007603 ~ 34026160 (-)
AMCG00009333 NA other upstream 3094865 34042076 ~ 34050737 (-)
AMCG00009342 kcnab1 other upstream 3280063 34227274 ~ 34274084 (-)

Expression


Co-expression Network