G56021


Basic Information

Item Value
gene id G56021
gene name NA
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 32053787 ~ 32057482 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU70028
gcattatgaaaaaatatgtttttatgaaaaatgcattttcaagacAGCAAGATTGTGTTCTGTGAAGTAAAGGAAGCCATCCTTTGGCCTTAGCGAATATACACAACTTCCCCACATCTCCTACAACAATTGTGGCAGGATCCGGTtatgaaaagcattttagtTGTAATATTTCAAACCAAGTTAGAAAAGATATTCTACACTAGAAGGAGATTTACATTTCAGGACATGGtggtatatctatatatattttaaaaacggACAAGCACTTAACAAAAGTAAGAAATATAGATTTAAGAGAATAAACTGTACTATGATTTTTTACAATTGAATGTTCATTCCCATTTTACTGAAATCATTAATTTCATATTCTACCAAATGTGTAGATAGCTAGcgattatgttttttgttagatCACAGACCTTCagataaaaggaaattaatcaaaatacatattcttttCAAATACACCTCTAAcccgaagaaaaaaaaaaaatcactctgCAAAACAAAGCGGAGCATTTCCATGAGATTTCCAAAATGACACCAAAGCAATAGCAGTATACATCCATGTGCaataagaaatgaatgaaagaataaaTTAAGAGATCATTTAAGAATGTGGCACTTTAGTAGGAGCTCTCGGGTGTGAATTCATTGCTTCACGTTCAGTTCATAAAGTTCCATGTCTTCAAGTGTGAAATGTGACTGTTCTGTAATGCACTTCCCTTTAAAAAGCTGGTTTACTCATATACTCCTCCATTGtCTCTTGTAACATATCAGACTCCTCGATGGATTTTGCAATCAACAGTTTGGATGTTTCCTGAATTTCCCCTCCCATGAGAAACTCGTCTAGTATAAAATAGgccttttcaaaattaaaaatgatgtcCAACTCGCATACCTTCAGACGCAAAAGTAAGAGTTATTAAACTGCCAATCATGTGGGTAGCGTAAACCCTTCTGAAAGCTTACCAGAGTAATTTGATTTCTCGTGCTTTCCATTCGATTTTGTGATTTGCTTTCCAATAGTTTTCAGTCATGGTTTATTATAGCTTTCACTGCTTTAAATCAGGCAATCAAGAAATACTACATCATTTACTTGTTGACTGGATGATACAGTTCTTAAATACAGAAAGTCACTCTTAAggtaaagagagagggagatgacagaaaatgtatacatgattCTGTAGATTTGTAACAACCCAGCTGATAAATTAGAAAAGTTTTAGTTAACTTTAATCTGCTTTCTAAGAATTATAGGTATTTCCTAAACAAAATGTTCTACAAGAAGTGATAAGCTAGTTtaaccaaataattaaaatccaaattCAGGTTTTGGATGATTTTGAAAGGCCTAccacaaaagtaaattaatttcataaaaAGAGAGATAAACATTATATGTATCCCATGAAGAAGGTTATACAGatcatacatatacacaggAGAGAAACGTTTGCTGTCAGAGTTTAAATTAGCTTACATTGCCGAAGTACTTGTCTAGAAGTTCAACATAACGGTGTAGGATTTCCAAAGCCAAAAGTTCATTGTCCTGGTCCTCCATGGCACAGCAGAAATACAAGCTTgcatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70028 True 1598 lncRNA 0.33 2 32053787 32057482

Neighbor

gene id symbol gene type direction distance location
AMCG00009291 NA coding upstream 1394 32050504 ~ 32052393 (+)
AMCG00009292 NA coding upstream 44699 32008564 ~ 32009088 (+)
AMCG00009288 acsl3b,LOC107567703,LOC106568845,LOC107745612 coding upstream 54701 31968819 ~ 31999086 (+)
AMCG00009284 NA coding upstream 93890 31954671 ~ 31959897 (+)
AMCG00009283 NA coding upstream 113096 31920687 ~ 31940691 (+)
AMCG00009289 NA coding downstream 3331 32060813 ~ 32066699 (+)
AMCG00009293 NA coding downstream 57996 32115478 ~ 32119196 (+)
AMCG00009298 NA coding downstream 125643 32183125 ~ 32196353 (+)
AMCG00009304 NA coding downstream 464036 32521518 ~ 32533407 (+)
AMCG00009305 gfm1 coding downstream 476395 32533877 ~ 32548495 (+)
G55929 NA non-coding upstream 501625 31548531 ~ 31552162 (+)
G55926 NA non-coding upstream 506555 31542621 ~ 31547232 (+)
G55807 NA non-coding upstream 890636 31155518 ~ 31163151 (+)
G55800 NA non-coding upstream 1103578 30947366 ~ 30950209 (+)
G55745 NA non-coding upstream 1451755 30599474 ~ 30602032 (+)
G56062 NA non-coding downstream 109383 32166865 ~ 32168048 (+)
G56064 cul3,LOC100710156,LOC107384027 non-coding downstream 116825 32174307 ~ 32179259 (+)
G56120 NA non-coding downstream 490525 32548007 ~ 32553904 (+)
G56211 ppm1l,LOC108430727,LOC105935930 non-coding downstream 890655 32948137 ~ 32950966 (+)
G56261 NA non-coding downstream 1048888 33106370 ~ 33106621 (+)
G55591 NA other upstream 2058349 29995126 ~ 29995438 (+)
G55573 NA other upstream 2142223 29907911 ~ 29911564 (+)
AMCG00009220 lsm2,LSM2,smx5 other upstream 2879056 29171323 ~ 29174731 (+)
AMCG00009208 NA other upstream 2945560 29103608 ~ 29108227 (+)
AMCG00009207 rab6ba,rab6b,LOC107552273,LOC107696768,LOC103151367,LOC106527458,LOC107088682,LOC102207753,LOC107752652 other upstream 3042019 28928892 ~ 29011768 (+)
G56060 NA other downstream 104278 32161760 ~ 32165365 (+)
G56368 NA other downstream 1943314 34000796 ~ 34031445 (+)
G56369 NA other downstream 1958188 34015670 ~ 34018815 (+)
AMCG00009345 NA other downstream 2305937 34363419 ~ 34369257 (+)
G56536 LOC100846954 other downstream 3331432 35388914 ~ 35389327 (+)

Expression


Co-expression Network