G56541 (LOC103376870)


Basic Information

Item Value
gene id G56541
gene name LOC103376870
gene type non-coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 35538887 ~ 35539807 (+)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU70674
aatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcagAAATCGagactcatcagaccaggcaacatttttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacaagtggttatttcagtcaaagttgatgttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccacATACTGGATGTTtgtcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggccgtctggca
>TU70675
aatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacgatgccctattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccagcctgcacagtggtaacaaggcatgatggatccatgttctcattctgtttacACCAAATTCTGACTCTGAATGTCTCAACAGAAATCGagactcatcagaccaggcaacatttttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacaagtggttatttcagtcaaagttgatgttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccacATACTGGATGTTtgtcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggccgtctggca
>TU70676
aatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacgatgccctattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccagCAACTGAATGTCTCAACAGAAATCGagactcatcagaccaggcaacatttttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacaagtggttatttcagtcaaagttgatgttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccacATACTGGATGTTtgtcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggccgtctggca
>TU70677
aatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacgatgccctattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccagcctgcacagtggtaacaaggcatgatggatccatgttctcattctgtttacACCAAATTCTGAATGTCTCAACAGAAATCGagactcatcagaccaggcaacatttttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacaagtggttatttcagtcaaagttgatgttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccacATACTGGATGTTtgtcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggccgtctggcaccaacaaccatgccacgctcaaaattg
>TU70678
aatcttgcagttgatggagatttgtgggatgcacatccagggcacgaagctcccgttccaccacatcccaaagatgctctattgggttgagatctggtgactgtgggggccagtttagtacagtgaactcattgtcatgttcaagaaaccaatttgaaatgattcgacctttgtgacatggtgcattatcctgctggaagtagccatcagaggatgggtacatggtggtcataaagggatggacatggtcagaaacaatgctcaggtaggccgtggcatttaaacgatgccctattggcactaaggggcctaaagtgtgccaagaaaacatcccccacaccattacaccaccaccagcctgcacagtggtaacaaggcatgatggatccatgttctcattctgtttacACCAAATTCTGACAGAAATCGagactcatcagaccaggcaacatttttccagtcttcaactgtccaattttggtgagcttgtgcaaattgtagcctctttttcctatttgtagtggagatgagtggtacccggtggggtcttctgctgttgtagcccatccgcctcaaggttgtacgtgttgtggcttcacaaatgctttgctgcatacctcggttgtaacaagtggttatttcagtcaaagttgatgttctatcagcttgaatcagtcggcccattctcctctgacctctagcatcaacaaggcattttcgcccacaggactgccacATACTGGATGTTtgtcccttttcacaccattctttgtaaaccctagaaatggttgtgcgtgaaaatcccagtaactgagcagattgtgaaatactcagaccggccgtctggca

Function

NR:

description
PREDICTED: cytochrome c oxidase subunit 8B, mitochondrial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70674 False 691 lncRNA 0.46 2 35538887 35539780
TU70675 False 864 lncRNA 0.47 2 35538887 35539780
TU70676 False 802 lncRNA 0.47 2 35538887 35539780
TU70677 True 885 lncRNA 0.47 2 35538887 35539807
TU70678 False 849 lncRNA 0.47 2 35538887 35539780

Neighbor

gene id symbol gene type direction distance location
AMCG00009372 NA coding upstream 446001 35085474 ~ 35092886 (+)
AMCG00009371 NA coding upstream 472555 35062938 ~ 35066332 (+)
AMCG00009370 NA coding upstream 598260 34936048 ~ 34940627 (+)
AMCG00009369 NA coding upstream 652941 34867644 ~ 34885946 (+)
AMCG00009368 NA coding upstream 673247 34844468 ~ 34865640 (+)
AMCG00009375 NA coding downstream 306163 35845970 ~ 35846681 (+)
AMCG00009377 NA coding downstream 665003 36204810 ~ 36205884 (+)
AMCG00009376 NA coding downstream 666078 36205885 ~ 36206498 (+)
AMCG00009378 NA coding downstream 870251 36410058 ~ 36417003 (+)
AMCG00009380 NA coding downstream 975387 36515194 ~ 36515726 (+)
G56501 NA non-coding upstream 471658 35020234 ~ 35067229 (+)
G56495 NA non-coding upstream 575663 34962754 ~ 34963224 (+)
G56474 NA non-coding upstream 876542 34582947 ~ 34662345 (+)
G56379 NA non-coding upstream 1460048 34045490 ~ 34078839 (+)
G56376 NA non-coding upstream 1496628 34038134 ~ 34042259 (+)
G56542 NA non-coding downstream 35239 35575046 ~ 35576926 (+)
G56567 NA non-coding downstream 331021 35870828 ~ 35871040 (+)
G56582 NA non-coding downstream 386131 35925938 ~ 35926195 (+)
G56584 NA non-coding downstream 387565 35927372 ~ 36034695 (+)
G56623 NA non-coding downstream 936631 36476438 ~ 36479375 (+)
G56536 LOC100846954 other upstream 149560 35388914 ~ 35389327 (+)
AMCG00009345 NA other upstream 1169630 34363419 ~ 34369257 (+)
G56368 NA other upstream 1507442 34000796 ~ 34031445 (+)
G56369 NA other upstream 1520072 34015670 ~ 34018815 (+)
G56060 NA other upstream 3373522 32161760 ~ 32165365 (+)
AMCG00009404 NA other downstream 1754096 37293903 ~ 37297009 (+)
AMCG00009405 pfn2,LOC105899220,LOC106598797,LOC105028925 other downstream 1808301 37348108 ~ 37367671 (+)
AMCG00009415 wwtr1,LOC107588432,LOC107732229,LOC107662944,LOC107572084 other downstream 1882210 37422017 ~ 37463505 (+)
AMCG00009429 NA other downstream 1991015 37530822 ~ 37605124 (+)
AMCG00009428 NA other downstream 2068498 37608305 ~ 37616696 (+)

Expression


Co-expression Network