G56546 (LOC103376870)


Basic Information

Item Value
gene id G56546
gene name LOC103376870
gene type unknown
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030126.1
NCBI id CM030126.1
chromosome length 46242406
location 35538887 ~ 35539810 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>TU70685
aagcaattttgagcgtggcatggttgttggtgccagacggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggacaAACATCCAGTATgtggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaacatcaactttgactgaaataaccacttgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacgtacaaccttgaggcggatgggctacaacagcagaagaccccaccgggtaccactcatctccactacaaataggaaaaagaggctacaatttgcacaagctcaccaaaattggacagttgaagactggaaaaatgttgcctggtctgatgagtctCGATTTCTGTTGAGACATTCAGAGTCAGAATTTGGTgtaaacagaatgagaacatggatccatcatgccttgttaccactgtgcaggctggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtgccaatagggcatcgtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggctacttccagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatt
>TU70686
aagcaattttgagcgtggcatggttgttggtgccagacggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggacaAACATCCAGTATgtggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaacatcaactttgactgaaataaccacttgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacgtacaaccttgaggcggatgggctacaacagcagaagaccccaccgggtaccactcatctccactacaaataggaaaaagaggctacaatttgcacaagctcaccaaaattggacagttgaagactggaaaaatgttgcctggtctgatgagtctCGATTTCTGTTGAGACATTCAGTTGATCAGAATTTGGTgtaaacagaatgagaacatggatccatcatgccttgttaccactgtgcaggctggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtgccaatagggcatcgtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggctacttccagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatt
>TU70688
aagcaattttgagcgtggcatggttgttggtgccagacggccggtctgagtatttcacaatctgctcagttactgggattttcacgcacaaccatttctagggtttacaaagaatggtgtgaaaagggacaAACATCCAGTATgtggcagtcctgtgggcgaaaatgccttgttgatgctagaggtcagaggagaatgggccgactgattcaagctgatagaacatcaactttgactgaaataaccacttgttacaaccgaggtatgcagcaaagcatttgtgaagccacaacacgtacaaccttgaggcggatgggctacaacagcagaagaccccaccgggtaccactcatctccactacaaataggaaaaagaggctacaatttgcacaagctcaccaaaattggacagttgaagactggaaaaatgttgcctggtctgatgagtctCGATTTCTGTCAGAATTTGGTgtaaacagaatgagaacatggatccatcatgccttgttaccactgtgcaggctggtggtggtgtaatggtgtgggggatgttttcttggcacactttaggccccttagtgccaatagggcatcgtttaaatgccacggcctacctgagcattgtttctgaccatgtccatccctttatgaccaccatgtacccatcctctgatggctacttccagcaggataatgcaccatgtcacaaaggtcgaatcatttcaaattggtttcttgaacatgacaatgagttcactgtactaaactggcccccacagtcaccagatctcaacccaatagagcatctttgggatgtggtggaacgggagcttcgtgccctggatgtgcatcccacaaatctccatcaactgcaagatt

Function

NR:

description
PREDICTED: uncharacterized protein LOC103376870

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70685 False 894 TUCP 0.47 2 35538887 35539810
TU70686 True 896 TUCP 0.47 2 35538887 35539810
TU70688 False 879 TUCP 0.47 2 35538887 35539810

Neighbor

gene id symbol gene type direction distance location
AMCG00009363 NA coding downstream 682420 34844519 ~ 34856467 (-)
AMCG00009365 NA coding downstream 705720 34832534 ~ 34833167 (-)
AMCG00009364 NA coding downstream 770821 34765834 ~ 34768066 (-)
AMCG00009366 NA coding downstream 793097 34745118 ~ 34745790 (-)
AMCG00009362 NA coding downstream 838366 34699864 ~ 34700521 (-)
AMCG00009374 NA coding upstream 367402 35907212 ~ 35908512 (-)
AMCG00009383 NA coding upstream 996356 36536166 ~ 36550686 (-)
AMCG00009385 NA coding upstream 1036397 36576207 ~ 36576473 (-)
AMCG00009384 NA coding upstream 1080596 36620406 ~ 36623497 (-)
AMCG00009382 NA coding upstream 1100424 36640234 ~ 36663731 (-)
G56540 NA non-coding downstream 21361 35517092 ~ 35517526 (-)
G56535 LOC108434093,LOC108264124,LOC103148094 non-coding downstream 162518 35376086 ~ 35376369 (-)
G56532 NA non-coding downstream 180237 35358340 ~ 35358650 (-)
G56522 NA non-coding downstream 189960 35348444 ~ 35348927 (-)
G56515 LOC103376870 non-coding downstream 365638 35172876 ~ 35173249 (-)
G56549 NA non-coding upstream 50958 35590768 ~ 35591092 (-)
G56564 NA non-coding upstream 242614 35782424 ~ 35814214 (-)
G56570 NA non-coding upstream 349640 35889450 ~ 35889682 (-)
G56611 NA non-coding upstream 540825 36080635 ~ 36105419 (-)
G56612 NA non-coding upstream 556998 36096808 ~ 36393518 (-)
AMCG00009347 gmps other downstream 1176546 34334261 ~ 34362341 (-)
G56438 kcnab1a,kcnab1,LOC107671078,LOC107675612,LOC107566585,LOC108263953 other downstream 1222879 34239484 ~ 34316008 (-)
AMCG00009342 kcnab1 other downstream 1264803 34227274 ~ 34274084 (-)
AMCG00009333 NA other downstream 1488150 34042076 ~ 34050737 (-)
AMCG00009332 NA other downstream 1512727 34007603 ~ 34026160 (-)
G56568 NA other upstream 332313 35872123 ~ 35872597 (-)
G56800 NA other upstream 1676150 37215960 ~ 37220076 (-)
AMCG00009409 selenot,LOC107681817,LOC106599070,LOC107708642 other upstream 1740738 37280548 ~ 37285365 (-)
AMCG00009408 NA other upstream 1745766 37285576 ~ 37394988 (-)
AMCG00009417 NA other upstream 1927444 37467254 ~ 37476035 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021955 podn coding NC_007134.7 CM002907.2 41889093 ~ 41931897 (+)
eurasian perch (Perca fluviatilis) G236249 LOC103376870 non-coding NC_053135.1 CM020932.1 20271475 ~ 20272734 (-)
striped catfish (Pangasianodon hypophthalmus) G21136 NA non-coding NC_047596.1 CM018542.1 3649331 ~ 3651978 (+)
mexican tetra (Astyanax mexicanus) LOC111196695 LOC108271652 non-coding NW_019170901.1 APWO02000499.1 195395 ~ 198841 (+)